KEGG   PATHWAY: osp00020
Entry
osp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Odoribacter splanchnicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
osp00020  Citrate cycle (TCA cycle)
osp00020

Module
osp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:osp00020]
osp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:osp00020]
Other DBs
GO: 0006099
Organism
Odoribacter splanchnicus [GN:osp]
Gene
Odosp_2171  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Odosp_2299  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Odosp_3201  3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Odosp_2298  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Odosp_3200  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Odosp_3199  Pyruvate/ketoisovalerate oxidoreductase [KO:K00177] [EC:1.2.7.3]
Odosp_3202  putative ferredoxin 4Fe-4S [KO:K00176] [EC:1.2.7.3]
Odosp_3236  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Odosp_3235  ferredoxin [KO:K00240] [EC:1.3.5.1]
Odosp_3237  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Odosp_0532  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Odosp_3284  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Odosp_1622  Pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
Odosp_1900  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Odosp_0176  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
osp00010  Glycolysis / Gluconeogenesis
osp00053  Ascorbate and aldarate metabolism
osp00061  Fatty acid biosynthesis
osp00071  Fatty acid degradation
osp00190  Oxidative phosphorylation
osp00220  Arginine biosynthesis
osp00250  Alanine, aspartate and glutamate metabolism
osp00280  Valine, leucine and isoleucine degradation
osp00350  Tyrosine metabolism
osp00470  D-Amino acid metabolism
osp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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