KEGG   PATHWAY: pai03030
Entry
pai03030                    Pathway                                
Name
DNA replication - Pyrobaculum aerophilum
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
pai03030  DNA replication
pai03030

Organism
Pyrobaculum aerophilum [GN:pai]
Gene
PAE2112  conserved protein (toprim domain) [KO:K02316] [EC:2.7.7.101]
PAE1792  hypothetical protein [KO:K03469] [EC:3.1.26.4]
PAE1216  ribonuclease HII (rnhB) [KO:K03470] [EC:3.1.26.4]
PAE2109  DNA-directed DNA polymerase (B3) [KO:K02319] [EC:2.7.7.7]
PAE2180  DNA-directed DNA polymerase (B1) [KO:K02319] [EC:2.7.7.7]
PAE1113  possible DNA-directed DNA polymerase (B2) [KO:K02319] [EC:2.7.7.7]
PAE0901  DNA replication licensing factor (mcm) [KO:K10726] [EC:5.6.2.3]
PAE3036  DNA primase related protein [KO:K02683] [EC:2.7.7.102]
PAE2238  conserved protein (possible primase) [KO:K18882]
PAE3038  proliferating-cell nuclear antigen homolog (PCNA) [KO:K04802]
PAE0720  proliferating-cell nuclear antigen homolog (PCNA) [KO:K04802]
PAE0734  replication factor C small subunit [KO:K04801]
PAE1646  replication factor C small subunit [KO:K04801]
PAE0735  replication factor C large subunit [KO:K04800]
PAE0698  DNA endonuclease rad2 homolog [KO:K04799] [EC:3.1.-.-]
PAE0833  DNA ligase [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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