KEGG   PATHWAY: pfe00020
Entry
pfe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas ogarae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfe00020  Citrate cycle (TCA cycle)
pfe00020

Module
pfe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pfe00020]
pfe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfe00020]
pfe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfe00020]
pfe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfe00020]
pfe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfe00020]
Other DBs
GO: 0006099
Organism
Pseudomonas ogarae [GN:pfe]
Gene
PSF113_3583  xis; Xis [KO:K01647] [EC:2.3.3.1]
PSF113_4245  gltA; GltA [KO:K01647] [EC:2.3.3.1]
PSF113_3999  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PSF113_2425  acnB; AcnB [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PSF113_2168  Isocitrate dehydrogenase [NADP], Monomeric isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
PSF113_2169  icd; Icd [KO:K00031] [EC:1.1.1.42]
PSF113_4240  sucA; SucA [KO:K00164] [EC:1.2.4.2]
PSF113_4239  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
PSF113_2343  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSF113_5877  lpd3; Lpd3 [KO:K00382] [EC:1.8.1.4]
PSF113_4238  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSF113_4236  sucD; SucD [KO:K01902] [EC:6.2.1.5]
PSF113_4237  sucC; SucC [KO:K01903] [EC:6.2.1.5]
PSF113_0146  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
PSF113_4242  sdhA; SdhA [KO:K00239] [EC:1.3.5.1]
PSF113_4241  sdhB; SdhB [KO:K00240] [EC:1.3.5.1]
PSF113_4244  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
PSF113_4243  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
PSF113_4658  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
PSF113_0934  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
PSF113_1622  fumC2; FumC2 [KO:K01679] [EC:4.2.1.2]
PSF113_4906  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PSF113_2971  mqo; Mqo [KO:K00116] [EC:1.1.5.4]
PSF113_5850  accC2; AccC [KO:K01959] [EC:6.4.1.1]
PSF113_5849  oadA; OadA [KO:K01960] [EC:6.4.1.1]
PSF113_0288  pckA; PckA [KO:K01610] [EC:4.1.1.49]
PSF113_3502  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
PSF113_0502  aceE; AceE [KO:K00163] [EC:1.2.4.1]
PSF113_0501  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
PSF113_3716  Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfe00010  Glycolysis / Gluconeogenesis
pfe00053  Ascorbate and aldarate metabolism
pfe00061  Fatty acid biosynthesis
pfe00071  Fatty acid degradation
pfe00190  Oxidative phosphorylation
pfe00220  Arginine biosynthesis
pfe00250  Alanine, aspartate and glutamate metabolism
pfe00280  Valine, leucine and isoleucine degradation
pfe00350  Tyrosine metabolism
pfe00470  D-Amino acid metabolism
pfe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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