KEGG   PATHWAY: pjd03430
Entry
pjd03430                    Pathway                                
Name
Mismatch repair - Paenibacillus sp. JDR-2
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
pjd03430  Mismatch repair
pjd03430

Other DBs
GO: 0006298
Organism
Paenibacillus sp. JDR-2 [GN:pjd]
Gene
Pjdr2_2606  DNA mismatch repair protein MutS [KO:K03555]
Pjdr2_1389  MutS2 family protein [KO:K07456]
Pjdr2_2645  DNA mismatch repair protein MutS domain protein [KO:K07456]
Pjdr2_2607  DNA mismatch repair protein MutL [KO:K03572]
Pjdr2_5720  ATP-dependent DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
Pjdr2_4306  conserved hypothetical protein [KO:K03657] [EC:5.6.2.4]
Pjdr2_1267  UvrD/REP helicase [KO:K03657] [EC:5.6.2.4]
Pjdr2_2255  conserved hypothetical protein [KO:K03657] [EC:5.6.2.4]
Pjdr2_2957  UvrD/Rep family helicase [KO:K03657] [EC:5.6.2.4]
Pjdr2_2309  exodeoxyribonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
Pjdr2_2310  exodeoxyribonuclease VII, small subunit [KO:K03602] [EC:3.1.11.6]
Pjdr2_4386  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
Pjdr2_6272  single-strand binding protein [KO:K03111]
Pjdr2_4482  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
Pjdr2_3412  DNA polymerase III, alpha subunit [KO:K03763] [EC:2.7.7.7]
Pjdr2_0002  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Pjdr2_0144  DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
Pjdr2_2197  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
Pjdr2_0016  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
Pjdr2_2143  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
Pjdr2_5719  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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