KEGG   PATHWAY: pop00970
Entry
pop00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Populus trichocarpa (black cottonwood)
Class
Genetic Information Processing; Translation
Pathway map
pop00970  Aminoacyl-tRNA biosynthesis
pop00970

Organism
Populus trichocarpa (black cottonwood) [GN:pop]
Gene
18097228  [KO:K04567] [EC:6.1.1.6]
18098342  [KO:K01869] [EC:6.1.1.4]
18098472  [KO:K01885] [EC:6.1.1.17]
18099392  [KO:K01873] [EC:6.1.1.9]
18099405  [KO:K00604] [EC:2.1.2.9]
18100157  [KO:K01892] [EC:6.1.1.21]
18100479  [KO:K04567] [EC:6.1.1.6]
18102530  [KO:K01868] [EC:6.1.1.3]
18102565  [KO:K01886] [EC:6.1.1.18]
18104387  [KO:K01889] [EC:6.1.1.20]
18105304  [KO:K01866] [EC:6.1.1.1]
18106518  [KO:K01881] [EC:6.1.1.15]
18106906  [KO:K01893] [EC:6.1.1.22]
18106949  [KO:K01870] [EC:6.1.1.5]
18107083  [KO:K01874] [EC:6.1.1.10]
18107597  [KO:K02435] [EC:6.3.5.6 6.3.5.7]
18107657  [KO:K01890] [EC:6.1.1.20]
18107659  [KO:K01893] [EC:6.1.1.22]
18107748  [KO:K02433] [EC:6.3.5.6 6.3.5.7]
18111133  [KO:K01869] [EC:6.1.1.4]
4929630  trnK; tRNA-Lys [KO:K14229]
4929632  Poptr_cpR003; tRNA-Gln [KO:K14223]
4929635  Poptr_cpR004; tRNA-Ser [KO:K14233]
4929636  Poptr_cpR005; tRNA-Gly [KO:K14225]
4929637  Poptr_cpR006; tRNA-Arg [KO:K14219]
4929646  Poptr_cpR007; tRNA-Cys [KO:K14222]
4929649  Poptr_cpR008; tRNA-Asp [KO:K14221]
4929650  Poptr_cpR009; tRNA-Tyr [KO:K14236]
4929651  Poptr_cpR010; tRNA-Glu [KO:K14224]
4929652  Poptr_cpR011; tRNA-Thr [KO:K14234]
4929656  Poptr_cpR012; tRNA-Ser [KO:K14233]
4929659  Poptr_cpR013; tRNA-Gly [KO:K14225]
4929660  Poptr_cpR014; tRNA-Met [KO:K14230]
4929665  Poptr_cpR015; tRNA-Ser [KO:K14233]
4929667  Poptr_cpR016; tRNA-Thr [KO:K14234]
4929668  Poptr_cpR017; tRNA-Leu [KO:K14228]
4929669  Poptr_cpR018; tRNA-Phe [KO:K14231]
4929673  Poptr_cpR019; tRNA-Val [KO:K14237]
4929674  Poptr_cpR020; tRNA-Met [KO:K14230]
4929690  Poptr_cpR021; tRNA-Trp [KO:K14235]
4929691  Poptr_cpR022; tRNA-Pro [KO:K14232]
4929697  Poptr_cpR001; tRNA-His [KO:K14226]
4929716  trnI-CAU; tRNA-Ile [KO:K14230]
4929719  Poptr_cpR024; tRNA-Leu [KO:K14228]
4929725  Poptr_cpR025; tRNA-Val [KO:K14237]
4929727  Poptr_cpR027; tRNA-Ile [KO:K14227]
4929729  trnA; tRNA-Ala [KO:K14218]
4929734  Poptr_cpR032; tRNA-Arg [KO:K14219]
4929735  Poptr_cpR033; tRNA-Asn [KO:K14220]
4929738  Poptr_cpR034; tRNA-Leu [KO:K14228]
4929749  Poptr_cpR035; tRNA-Asn [KO:K14220]
4929750  Poptr_cpR036; tRNA-Arg [KO:K14219]
4929755  trnA; tRNA-Ala [KO:K14218]
4929756  Poptr_cpR041; tRNA-Ile [KO:K14227]
4929759  Poptr_cpR043; tRNA-Val [KO:K14237]
4929765  Poptr_cpR044; tRNA-Leu [KO:K14228]
4929769  trnI-CAU; tRNA-Ile [KO:K14230]
7454925  [KO:K22503] [EC:6.1.1.12]
7455249  [KO:K01892] [EC:6.1.1.21]
7455977  [KO:K01868] [EC:6.1.1.3]
7456375  [KO:K01889] [EC:6.1.1.20]
7458385  [KO:K01883] [EC:6.1.1.16]
7459512  [KO:K01893] [EC:6.1.1.22]
7460441  [KO:K01887] [EC:6.1.1.19]
7461791  [KO:K01875] [EC:6.1.1.11]
7463354  [KO:K01885] [EC:6.1.1.17]
7464757  [KO:K01885] [EC:6.1.1.17]
7465570  [KO:K01873] [EC:6.1.1.9]
7469583  [KO:K01893] [EC:6.1.1.22]
7469599  [KO:K01870] [EC:6.1.1.5]
7469656  [KO:K01876] [EC:6.1.1.12]
7469990  [KO:K01889] [EC:6.1.1.20]
7470766  [KO:K01876] [EC:6.1.1.12]
7471476  [KO:K01868] [EC:6.1.1.3]
7472090  [KO:K01872] [EC:6.1.1.7]
7475579  [KO:K01883] [EC:6.1.1.16]
7477145  [KO:K01873] [EC:6.1.1.9]
7478581  [KO:K01867] [EC:6.1.1.2]
7480895  [KO:K02434] [EC:6.3.5.6 6.3.5.7]
7481445  [KO:K01881] [EC:6.1.1.15]
7482395  [KO:K01890] [EC:6.1.1.20]
7482845  [KO:K01886] [EC:6.1.1.18]
7484534  [KO:K01869] [EC:6.1.1.4]
7484683  [KO:K01893] [EC:6.1.1.22]
7486389  [KO:K01872] [EC:6.1.1.7]
7486390  [KO:K01875] [EC:6.1.1.11]
7486786  [KO:K14164] [EC:6.1.1.14]
7486842  [KO:K01881] [EC:6.1.1.15]
7488956  [KO:K04567] [EC:6.1.1.6]
7489580  [KO:K01874] [EC:6.1.1.10]
7491435  [KO:K01880] [EC:6.1.1.14]
7491576  [KO:K01866] [EC:6.1.1.1]
7495848  [KO:K01874] [EC:6.1.1.10]
7496527  [KO:K01880] [EC:6.1.1.14]
7497563  [KO:K01867] [EC:6.1.1.2]
7497952  [KO:K01870] [EC:6.1.1.5]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
pop00250  Alanine, aspartate and glutamate metabolism
pop00260  Glycine, serine and threonine metabolism
pop00270  Cysteine and methionine metabolism
pop00290  Valine, leucine and isoleucine biosynthesis
pop00300  Lysine biosynthesis
pop00330  Arginine and proline metabolism
pop00340  Histidine metabolism
pop00380  Tryptophan metabolism
pop00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   

  All links  
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