KEGG   PATHWAY: pop00970
Entry
pop00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Populus trichocarpa (black cottonwood)
Class
Genetic Information Processing; Translation
Pathway map
pop00970  Aminoacyl-tRNA biosynthesis
pop00970

Organism
Populus trichocarpa (black cottonwood) [GN:pop]
Gene
4929729  trnA; tRNA-Ala [KO:K14218]
4929755  trnA; tRNA-Ala [KO:K14218]
4929637  Poptr_cpR006; tRNA-Arg [KO:K14219]
4929734  Poptr_cpR032; tRNA-Arg [KO:K14219]
4929750  Poptr_cpR036; tRNA-Arg [KO:K14219]
4929735  Poptr_cpR033; tRNA-Asn [KO:K14220]
4929749  Poptr_cpR035; tRNA-Asn [KO:K14220]
4929649  Poptr_cpR008; tRNA-Asp [KO:K14221]
4929646  Poptr_cpR007; tRNA-Cys [KO:K14222]
4929632  Poptr_cpR003; tRNA-Gln [KO:K14223]
4929651  Poptr_cpR010; tRNA-Glu [KO:K14224]
4929659  Poptr_cpR013; tRNA-Gly [KO:K14225]
4929636  Poptr_cpR005; tRNA-Gly [KO:K14225]
4929697  Poptr_cpR001; tRNA-His [KO:K14226]
4929727  Poptr_cpR027; tRNA-Ile [KO:K14227]
4929756  Poptr_cpR041; tRNA-Ile [KO:K14227]
4929668  Poptr_cpR017; tRNA-Leu [KO:K14228]
4929738  Poptr_cpR034; tRNA-Leu [KO:K14228]
4929719  Poptr_cpR024; tRNA-Leu [KO:K14228]
4929765  Poptr_cpR044; tRNA-Leu [KO:K14228]
4929630  trnK; tRNA-Lys [KO:K14229]
4929660  Poptr_cpR014; tRNA-Met [KO:K14230]
4929674  Poptr_cpR020; tRNA-Met [KO:K14230]
4929716  trnI-CAU; tRNA-Ile [KO:K14230]
4929769  trnI-CAU; tRNA-Ile [KO:K14230]
4929669  Poptr_cpR018; tRNA-Phe [KO:K14231]
4929691  Poptr_cpR022; tRNA-Pro [KO:K14232]
4929656  Poptr_cpR012; tRNA-Ser [KO:K14233]
4929635  Poptr_cpR004; tRNA-Ser [KO:K14233]
4929665  Poptr_cpR015; tRNA-Ser [KO:K14233]
4929667  Poptr_cpR016; tRNA-Thr [KO:K14234]
4929652  Poptr_cpR011; tRNA-Thr [KO:K14234]
4929690  Poptr_cpR021; tRNA-Trp [KO:K14235]
4929650  Poptr_cpR009; tRNA-Tyr [KO:K14236]
4929673  Poptr_cpR019; tRNA-Val [KO:K14237]
4929725  Poptr_cpR025; tRNA-Val [KO:K14237]
4929759  Poptr_cpR043; tRNA-Val [KO:K14237]
7463354  glutamate--tRNA ligase, chloroplastic/mitochondrial isoform X2 [KO:K01885] [EC:6.1.1.17]
18098472  glutamate--tRNA ligase, cytoplasmic [KO:K01885] [EC:6.1.1.17]
7464757  glutamate--tRNA ligase, cytoplasmic [KO:K01885] [EC:6.1.1.17]
18107748  glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [KO:K02433] [EC:6.3.5.6 6.3.5.7]
7480895  glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial isoform X1 [KO:K02434] [EC:6.3.5.6 6.3.5.7]
18107597  glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like isoform X1 [KO:K02435] [EC:6.3.5.6 6.3.5.7]
18102565  LOW QUALITY PROTEIN: glutamine--tRNA ligase, cytoplasmic-like [KO:K01886] [EC:6.1.1.18]
7482845  glutamine--tRNA ligase, cytoplasmic isoform X1 [KO:K01886] [EC:6.1.1.18]
7472090  alanine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [KO:K01872] [EC:6.1.1.7]
7486389  alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
7454925  aspartate--tRNA ligase 2, cytoplasmic [KO:K22503] [EC:6.1.1.12]
7470766  aspartate--tRNA ligase, chloroplastic/mitochondrial [KO:K01876] [EC:6.1.1.12]
7469656  aspartate--tRNA ligase, chloroplastic/mitochondrial [KO:K01876] [EC:6.1.1.12]
7459512  asparagine--tRNA ligase, cytoplasmic 2 [KO:K01893] [EC:6.1.1.22]
7469583  asparagine--tRNA ligase, chloroplastic/mitochondrial [KO:K01893] [EC:6.1.1.22]
18106906  asparagine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [KO:K01893] [EC:6.1.1.22]
18107659  asparagine--tRNA ligase, cytoplasmic 1 [KO:K01893] [EC:6.1.1.22]
7484683  asparagine--tRNA ligase, cytoplasmic 1 [KO:K01893] [EC:6.1.1.22]
7491435  glycine--tRNA ligase, mitochondrial 1 [KO:K01880] [EC:6.1.1.14]
7496527  glycine--tRNA ligase, mitochondrial 1 [KO:K01880] [EC:6.1.1.14]
7486786  glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [KO:K14164] [EC:6.1.1.14]
7471476  threonine--tRNA ligase, mitochondrial 1 [KO:K01868] [EC:6.1.1.3]
7455977  threonine--tRNA ligase, chloroplastic/mitochondrial 2 [KO:K01868] [EC:6.1.1.3]
18102530  LOW QUALITY PROTEIN: threonine--tRNA ligase, mitochondrial 1-like [KO:K01868] [EC:6.1.1.3]
7461791  serine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [KO:K01875] [EC:6.1.1.11]
7486390  serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
7475579  cysteine--tRNA ligase 2, cytoplasmic isoform X1 [KO:K01883] [EC:6.1.1.16]
7458385  cysteine--tRNA ligase, chloroplastic/mitochondrial isoform X2 [KO:K01883] [EC:6.1.1.16]
7489580  methionine--tRNA ligase, chloroplastic/mitochondrial [KO:K01874] [EC:6.1.1.10]
18107083  probable methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
7495848  probable methionine--tRNA ligase isoform X1 [KO:K01874] [EC:6.1.1.10]
18099405  uncharacterized protein LOC18099405 isoform X1 [KO:K00604] [EC:2.1.2.9]
7477145  valine--tRNA ligase, mitochondrial 1 isoform X1 [KO:K01873] [EC:6.1.1.9]
7465570  valine--tRNA ligase, mitochondrial 1 [KO:K01873] [EC:6.1.1.9]
18099392  valine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [KO:K01873] [EC:6.1.1.9]
18098342  leucine--tRNA ligase, cytoplasmic [KO:K01869] [EC:6.1.1.4]
18111133  leucine--tRNA ligase, cytoplasmic [KO:K01869] [EC:6.1.1.4]
7484534  leucine--tRNA ligase, chloroplastic/mitochondrial [KO:K01869] [EC:6.1.1.4]
18106949  isoleucine--tRNA ligase, cytoplasmic isoform X1 [KO:K01870] [EC:6.1.1.5]
7469599  LOW QUALITY PROTEIN: isoleucine--tRNA ligase, cytoplasmic [KO:K01870] [EC:6.1.1.5]
7497952  isoleucine--tRNA ligase, chloroplastic/mitochondrial isoform X2 [KO:K01870] [EC:6.1.1.5]
18097228  lysine--tRNA ligase, chloroplastic/mitochondrial [KO:K04567] [EC:6.1.1.6]
18100479  lysine--tRNA ligase, cytoplasmic [KO:K04567] [EC:6.1.1.6]
7488956  lysine--tRNA ligase, cytoplasmic isoform X4 [KO:K04567] [EC:6.1.1.6]
7460441  arginine--tRNA ligase, chloroplastic/mitochondrial isoform X2 [KO:K01887] [EC:6.1.1.19]
18106518  proline--tRNA ligase, chloroplastic/mitochondrial [KO:K01881] [EC:6.1.1.15]
7486842  proline--tRNA ligase, cytoplasmic [KO:K01881] [EC:6.1.1.15]
7481445  proline--tRNA ligase, cytoplasmic isoform X1 [KO:K01881] [EC:6.1.1.15]
18100157  histidine--tRNA ligase, chloroplastic/mitochondrial [KO:K01892] [EC:6.1.1.21]
7455249  histidine--tRNA ligase, cytoplasmic [KO:K01892] [EC:6.1.1.21]
7469990  phenylalanine--tRNA ligase alpha subunit, cytoplasmic [KO:K01889] [EC:6.1.1.20]
18104387  phenylalanine--tRNA ligase, chloroplastic/mitochondrial [KO:K01889] [EC:6.1.1.20]
7456375  phenylalanine--tRNA ligase alpha subunit, cytoplasmic [KO:K01889] [EC:6.1.1.20]
18107657  phenylalanine--tRNA ligase beta subunit, cytoplasmic [KO:K01890] [EC:6.1.1.20]
7482395  phenylalanine--tRNA ligase beta subunit, cytoplasmic isoform X1 [KO:K01890] [EC:6.1.1.20]
7491576  tyrosine--tRNA ligase 1, cytoplasmic [KO:K01866] [EC:6.1.1.1]
18105304  tyrosine--tRNA ligase, chloroplastic/mitochondrial [KO:K01866] [EC:6.1.1.1]
7478581  tryptophan--tRNA ligase, cytoplasmic [KO:K01867] [EC:6.1.1.2]
7497563  tryptophan--tRNA ligase, chloroplastic/mitochondrial [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
pop00250  Alanine, aspartate and glutamate metabolism
pop00260  Glycine, serine and threonine metabolism
pop00270  Cysteine and methionine metabolism
pop00290  Valine, leucine and isoleucine biosynthesis
pop00300  Lysine biosynthesis
pop00330  Arginine and proline metabolism
pop00340  Histidine metabolism
pop00380  Tryptophan metabolism
pop00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (96)   
   KEGG GENES (96)   
All databases (97)   

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