KEGG   PATHWAY: rpi00630
Entry
rpi00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Ralstonia pickettii 12J
Class
Metabolism; Carbohydrate metabolism
Pathway map
rpi00630  Glyoxylate and dicarboxylate metabolism
rpi00630

Module
rpi_M00012  Glyoxylate cycle [PATH:rpi00630]
rpi_M00621  Glycine cleavage system [PATH:rpi00630]
Other DBs
GO: 0046487 0043648
Organism
Ralstonia pickettii 12J [GN:rpi]
Gene
Rpic_4801  isocitrate lyase and phosphorylmutase [KO:K01637] [EC:4.1.3.1]
Rpic_0542  isocitrate lyase and phosphorylmutase [KO:K01637] [EC:4.1.3.1]
Rpic_1232  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Rpic_2099  acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]
Rpic_3974  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Rpic_4143  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Rpic_4644  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Rpic_1236  malate synthase A [KO:K01638] [EC:2.3.3.9]
Rpic_2153  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Rpic_2146  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Rpic_4041  citrate synthase [KO:K01647] [EC:2.3.3.1]
Rpic_3564  DNA binding domain protein, excisionase family [KO:K01647] [EC:2.3.3.1]
Rpic_2158  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Rpic_4479  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Rpic_4553  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Rpic_0126  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpic_1445  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpic_0414  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpic_4928  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpic_1910  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpic_1915  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpic_4412  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Rpic_1914  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Rpic_2902  D-lactate dehydrogenase (cytochrome) [KO:K00104] [EC:1.1.99.14]
Rpic_2903  FAD linked oxidase domain protein [KO:K11472] [EC:1.1.99.14]
Rpic_2904  protein of unknown function DUF224 cysteine-rich region domain protein [KO:K11473] [EC:1.1.99.14]
Rpic_0115  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Rpic_0692  Gluconate 2-dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Rpic_0899  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Rpic_0907  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
Rpic_3122  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Rpic_0678  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Rpic_3489  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
Rpic_3487  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Rpic_1944  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rpic_1099  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rpic_3488  glycine cleavage system H protein [KO:K02437]
Rpic_3478  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
Rpic_3479  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Rpic_2693  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Rpic_4497  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Rpic_3480  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Rpic_3481  Hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Rpic_0362  Hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Rpic_4192  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Rpic_4391  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Rpic_2586  molybdopterin oxidoreductase [KO:K00123] [EC:1.17.1.9]
Rpic_4642  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Rpic_2585  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00124]
Rpic_4643  NADH dehydrogenase (quinone) [KO:K00124]
Rpic_4392  NADH dehydrogenase (quinone) [KO:K00124]
Rpic_2583  formate dehydrogenase, gamma subunit [KO:K00127]
Rpic_0710  arylformamidase [KO:K07130] [EC:3.5.1.9]
Rpic_2074  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rpi00010  Glycolysis / Gluconeogenesis
rpi00020  Citrate cycle (TCA cycle)
rpi00030  Pentose phosphate pathway
rpi00053  Ascorbate and aldarate metabolism
rpi00071  Fatty acid degradation
rpi00230  Purine metabolism
rpi00250  Alanine, aspartate and glutamate metabolism
rpi00260  Glycine, serine and threonine metabolism
rpi00620  Pyruvate metabolism
rpi00710  Carbon fixation in photosynthetic organisms
rpi00750  Vitamin B6 metabolism
rpi00910  Nitrogen metabolism
KO pathway
ko00630   

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (54)   
   KEGG GENES (54)   
All databases (55)   

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