KEGG   PATHWAY: rpr00020
Entry
rpr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rickettsia prowazekii Madrid E
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rpr00020  Citrate cycle (TCA cycle)
rpr00020

Module
rpr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rpr00020]
rpr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rpr00020]
rpr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rpr00020]
rpr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rpr00020]
Other DBs
GO: 0006099
Organism
Rickettsia prowazekii Madrid E [GN:rpr]
Gene
RP844  RP844; CITRATE SYNTHASE (gltA) [KO:K01647] [EC:2.3.3.1]
RP799  RP799; ACONITATE HYDRATASE (acnA) [KO:K01681] [EC:4.2.1.3]
RP265  RP265; ISOCITRATE DEHYDROGENASE (icd) [KO:K00031] [EC:1.1.1.42]
RP180  RP180; 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT (sucA) [KO:K00164] [EC:1.2.4.2]
RP179  RP179; DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT (sucB) [KO:K00658] [EC:2.3.1.61]
RP460  RP460; DIHYDROLIPOAMIDE DEHYDROGENASE PRECURSOR (pdhD) [KO:K00382] [EC:1.8.1.4]
RP805  RP805; DIHYDROLIPOAMIDE DEHYDROGENASE (pdhD) [KO:K00382] [EC:1.8.1.4]
RP432  RP432; SUCCINYL-COA LIGASE (sucD) [KO:K01902] [EC:6.2.1.5]
RP433  RP433; SUCCINYL-COA SYNTHETASE BETA CHAIN (sucC) [KO:K01903] [EC:6.2.1.5]
RP128  RP128; SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT (sdhA) [KO:K00239] [EC:1.3.5.1]
RP044  RP044; SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN (sdhB) [KO:K00240] [EC:1.3.5.1]
RP126  RP126; SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT (sdhC) [KO:K00241]
RP127  RP127; SUCCINATE DEHYDROGENASE HYDROPHOBIC MEMBRANE ANCHOR PROTEIN (sdhD) [KO:K00242]
RP665  RP665; FUMARATE HYDRATASE (fumC) [KO:K01679] [EC:4.2.1.2]
RP376  RP376; MALATE DEHYDROGENASE (mdh) [KO:K00024] [EC:1.1.1.37]
RP261  RP261; PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT PRECURSOR (pdhA) [KO:K00161] [EC:1.2.4.1]
RP262  RP262; PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUBUNIT PRECURSOR (pdhB) [KO:K00162] [EC:1.2.4.1]
RP530  RP530; DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT (pdhC) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rpr00010  Glycolysis / Gluconeogenesis
rpr00061  Fatty acid biosynthesis
rpr00071  Fatty acid degradation
rpr00190  Oxidative phosphorylation
rpr00220  Arginine biosynthesis
rpr00250  Alanine, aspartate and glutamate metabolism
rpr00280  Valine, leucine and isoleucine degradation
rpr00470  D-Amino acid metabolism
rpr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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