KEGG   PATHWAY: shb00030
Entry
shb00030                    Pathway                                
Name
Pentose phosphate pathway - Salmonella enterica subsp. enterica serovar Heidelberg B182
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
shb00030  Pentose phosphate pathway
shb00030

Module
shb_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:shb00030]
shb_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:shb00030]
shb_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:shb00030]
shb_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:shb00030]
shb_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:shb00030]
shb_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:shb00030]
shb_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:shb00030]
shb_M00580  Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:shb00030]
Other DBs
GO: 0006098
Organism
Salmonella enterica subsp. enterica serovar Heidelberg B182 [GN:shb]
Gene
SU5_0297  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
SU5_03245  Glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
SU5_02497  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SU5_01457  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
SU5_02675  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
SU5_0177  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
SU5_03526  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
SU5_03958  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
SU5_02934  Transketolase [KO:K00615] [EC:2.2.1.1]
SU5_02935  Transketolase [KO:K00615] [EC:2.2.1.1]
SU5_03074  Transketolase [KO:K00615] [EC:2.2.1.1]
SU5_03577  Transketolase [KO:K00615] [EC:2.2.1.1]
SU5_0644  Transaldolase [KO:K00616] [EC:2.2.1.2]
SU5_03073  Transaldolase [KO:K00616] [EC:2.2.1.2]
SU5_03564  Ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
SU5_03531  Ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
SU5_03243  D-arabino-3-hexulose 6-phosphate formaldehyde lyase [KO:K08093] [EC:4.1.2.43]
SU5_03244  6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
SU5_03524  6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
SU5_0605  Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
SU5_011  Ribokinase [KO:K00852] [EC:2.7.1.15]
SU5_04270  Ribokinase [KO:K00852] [EC:2.7.1.15]
SU5_0607  Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
SU5_01382  Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
SU5_02384  Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
SU5_02496  Phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
SU5_02495  4-Hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SU5_04243  4-Hydroxy-2-oxoglutarate aldolase [KO:K17463] [EC:4.1.2.14]
SU5_0811  Glucose dehydrogenase, PQQ-dependent [KO:K00117] [EC:1.1.5.2]
SU5_04122  2-ketoaldonate reductase, broad specificity [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
SU5_0533  Gluconokinase [KO:K00851] [EC:2.7.1.12]
SU5_04017  Gluconokinase [KO:K00851] [EC:2.7.1.12]
SU5_04086  2-dehydro-3-deoxygluconate kinase [KO:K00874] [EC:2.7.1.45]
SU5_04248  PTS system, mannose-specific IIA component [KO:K17464] [EC:2.7.1.203]
SU5_04247  PTS system, mannose-specific IIA component [KO:K17465] [EC:2.7.1.203]
SU5_04246  PTS system, mannose-specific IIC component [KO:K17466]
SU5_04245  PTS system, mannose-specific IID component [KO:K17467]
SU5_04244  L-seryl-tRNA(Sec) selenium transferase-like protein [KO:K17468] [EC:4.3.1.29]
SU5_02734  Fructose-bisphosphate aldolase class I [KO:K11645] [EC:4.1.2.13]
SU5_03569  Fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
SU5_0484  Fructose-1,6-bisphosphatase, type I [KO:K03841] [EC:3.1.3.11]
SU5_0182  Fructose-1,6-bisphosphatase, GlpX [KO:K02446] [EC:3.1.3.11]
SU5_0160  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
SU5_01945  6-phosphofructokinase class II [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
shb00010  Glycolysis / Gluconeogenesis
shb00040  Pentose and glucuronate interconversions
shb00052  Galactose metabolism
shb00230  Purine metabolism
shb00240  Pyrimidine metabolism
shb00340  Histidine metabolism
shb00630  Glyoxylate and dicarboxylate metabolism
shb00750  Vitamin B6 metabolism
KO pathway
ko00030   

DBGET integrated database retrieval system