KEGG   PATHWAY: stq00020
Entry
stq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Spirochaeta thermophila DSM 6578
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
stq00020  Citrate cycle (TCA cycle)
stq00020

Module
stq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:stq00020]
stq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:stq00020]
Other DBs
GO: 0006099
Organism
Spirochaeta thermophila DSM 6578 [GN:stq]
Gene
Spith_1196  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Spith_2116  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Spith_1886  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Spith_0736  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Spith_2105  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Spith_2200  biotin/lipoyl attachment domain-containing protein [KO:K01960] [EC:6.4.1.1]
Spith_2203  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Spith_2010  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Spith_2009  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Spith_2008  catalytic domain-containing protein of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Spith_1347  catalytic domain-containing protein of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Spith_1722  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
stq00010  Glycolysis / Gluconeogenesis
stq00053  Ascorbate and aldarate metabolism
stq00061  Fatty acid biosynthesis
stq00190  Oxidative phosphorylation
stq00220  Arginine biosynthesis
stq00250  Alanine, aspartate and glutamate metabolism
stq00280  Valine, leucine and isoleucine degradation
stq00470  D-Amino acid metabolism
stq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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