KEGG   PATHWAY: tvi03430
Entry
tvi03430                    Pathway                                
Name
Mismatch repair - Thiocystis violascens
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
tvi03430  Mismatch repair
tvi03430

Other DBs
GO: 0006298
Organism
Thiocystis violascens [GN:tvi]
Gene
Thivi_3738  DNA mismatch repair protein MutS [KO:K03555]
Thivi_4001  DNA mismatch repair protein MutL [KO:K03572]
Thivi_2845  DNA/RNA helicase, superfamily I [KO:K03657] [EC:5.6.2.4]
Thivi_4321  exonuclease I [KO:K01141] [EC:3.1.11.1]
Thivi_2263  Exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
Thivi_4009  Exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
Thivi_0758  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
Thivi_1490  single stranded DNA-binding protein [KO:K03111]
Thivi_2470  single stranded DNA-binding protein [KO:K03111]
Thivi_1064  DNA-directed DNA polymerase III PolC [KO:K02337] [EC:2.7.7.7]
Thivi_2842  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Thivi_2713  DNA polymerase III, subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
Thivi_0984  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
Thivi_0024  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
Thivi_0245  DNA polymerase III epsilon subunit-like 3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
Thivi_3967  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
Thivi_1008  DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
Thivi_4489  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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