KEGG   PATHWAY: ure00020
Entry
ure00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Uncinocarpus reesii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ure00020  Citrate cycle (TCA cycle)
ure00020

Module
ure_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ure00020]
ure_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ure00020]
ure_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ure00020]
Other DBs
GO: 0006099
Organism
Uncinocarpus reesii [GN:ure]
Gene
UREG_04090  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
UREG_03582  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
UREG_04629  ATP-citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
UREG_04630  similar to ATP-citrat-lyase [KO:K01648] [EC:2.3.3.8]
UREG_05439  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
UREG_07614  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
UREG_03641  isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
UREG_07827  isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
UREG_05316  oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
UREG_06994  dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex [KO:K00658] [EC:2.3.1.61]
UREG_06178  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
UREG_05927  similar to succinyl-coA synthetase beta-subunit from sucC [KO:K01899] [EC:6.2.1.4 6.2.1.5]
UREG_04332  succinyl-CoA ligase alpha-chain [KO:K01899] [EC:6.2.1.4 6.2.1.5]
UREG_02609  succinyl-CoA ligase beta-chain [KO:K01900] [EC:6.2.1.4 6.2.1.5]
UREG_01411  succinate dehydrogenase flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
UREG_03831  succinate dehydrogenase flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
UREG_04544  succinate dehydrogenase iron-sulfur protein [KO:K00235] [EC:1.3.5.1]
UREG_03828  hypothetical protein [KO:K00236]
UREG_07057  hypothetical protein [KO:K00236]
UREG_04479  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
UREG_03159  malate dehydrogenase, NAD-dependent [KO:K00026] [EC:1.1.1.37]
UREG_06260  malate dehydrogenase, NAD-dependent [KO:K00026] [EC:1.1.1.37]
UREG_04749  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
UREG_02831  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
UREG_01196  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
UREG_03263  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
UREG_02548  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
UREG_06263  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ure00010  Glycolysis / Gluconeogenesis
ure00053  Ascorbate and aldarate metabolism
ure00061  Fatty acid biosynthesis
ure00062  Fatty acid elongation
ure00071  Fatty acid degradation
ure00190  Oxidative phosphorylation
ure00220  Arginine biosynthesis
ure00250  Alanine, aspartate and glutamate metabolism
ure00280  Valine, leucine and isoleucine degradation
ure00350  Tyrosine metabolism
ure00470  D-Amino acid metabolism
ure00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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