KEGG   Pseudomonas aeruginosa UCBPP-PA14: PA14_44660
Entry
PA14_44660        CDS       T00401                                 
Symbol
lig
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pau  Pseudomonas aeruginosa UCBPP-PA14
Pathway
pau03030  DNA replication
pau03410  Base excision repair
pau03420  Nucleotide excision repair
pau03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PA14_44660 (lig)
   03410 Base excision repair
    PA14_44660 (lig)
   03420 Nucleotide excision repair
    PA14_44660 (lig)
   03430 Mismatch repair
    PA14_44660 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pau03032]
    PA14_44660 (lig)
   03400 DNA repair and recombination proteins [BR:pau03400]
    PA14_44660 (lig)
Enzymes [BR:pau01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     PA14_44660 (lig)
DNA replication proteins [BR:pau03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     PA14_44660 (lig)
DNA repair and recombination proteins [BR:pau03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     PA14_44660 (lig)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PA14_44660 (lig)
   MMR (mismatch excision repair)
    DNA ligase
     PA14_44660 (lig)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      PA14_44660 (lig)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT RUBY_RBDX
Other DBs
NCBI-ProteinID: ABJ10709
UniProt: Q02K12
Position
complement(3976270..3978654)
AA seq 794 aa
MTDTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLLTPDS
PTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAE
VEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEI
LEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGF
GQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVV
FKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQV
AGVTVSNATLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVPEHC
PVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSRRAMDIDGLGD
KIVEQLVDRGLVASPADLYTLTYEQVFELEGFAELSTNNLLAAIADSRKPSLARFIFALG
IPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQL
RDAEHGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRADW
LDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGLPLAGQT
WVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDE
DGLLKLFDEHGVAR
NT seq 2385 nt   +upstreamnt  +downstreamnt
atgaccgacacccaggctgccgccgaacgcatcgcgcaactgcgaaccgaactggacacc
cacaactaccgttactacgtgctcgacgaaccgagcattcccgacgccgaatacgatcgc
ctgttccgcgagttgcaggcgctggagaccgagtacccgcaactgctgacgcccgactcg
ccgacccagcgggtcagcggcacgccggcctcggcgttcggcgaagtgcgccatgagatc
cccatgctcagcctcggcaacgctttcgaggagcaggacctgctggacttcgaccgccgc
gtacgcgaaggactggccgacctgttgcctggcggcgacctgctcggcggtggcgcggag
gtcgagtacagttgcgagccgaagctggacggcctggccgtcagcctgctctacgaacgc
ggccagttggtgcgcggcgccacccgcggcgatggcagcaccggcgaggacatcaccagc
aacgtacgcaccattcgcaacgtaccgctgaagctgcacggcgaaggctggccggagatc
ctcgaagtgcgcggcgaggtgttcatgtccaaggccggtttcgaggcgctcaacgccaag
gccgtggaaaccggcggcaagaccttcgccaacccgcgcaacgcggcggccggcagcctg
cgccagctggattcgaagatcaccgccagtcgcccgctggagttctgtgcctacggcttc
ggccaggtcagcgggacgctgccggacacccaggtgggcatcctcgaggcgttccgcggc
tggggtatccccatcagtcgcgagctgcgcctggtcaagggcgcccaggcctgccgcgac
tactacgacgacatcggtcgccgacgcgatgcgctggcctacgagatcgacggcgtggtg
ttcaaggtcaaccgcatcgccttccagcgcgaactgggcttccgcgcgcgcgagccgcgt
tgggcgatcgcccacaagttccccgcgcgcgaggagctgaccgagctgctgggtgtcgag
ttccaggtcggccgcaccggcgccgtgaccccggtggcacgcctcaagccggtgcaggtg
gccggcgtcacggtgtccaatgcgaccctgcacaacatggatgaagtcgcccgcctgggc
ctgcgcatcggcgatacggtggtgatccgccgtgctggcgatgtgattccgcaggtcatg
caggtggtgctcgagcgccgcccggcggatgcgcaggctatcgaggtgcccgagcattgc
ccggtctgcggctcggccgtggagcggacccagttggtcaagcgcagcaagggcaaggag
tcgatcagcgagggcgccatctatcgctgcgtcggccgcctctcctgtcaggcgcagttg
aagcaggcgatcatccatttcgtatcgcgccgggcaatggacatcgacggtcttggcgac
aagatcgtcgagcaactggtggatcgcgggctggtcgcctcgccggcggatctctatacc
ctgacctatgaacaggtgttcgagctggaagggttcgccgagctgtccaccaacaacctg
ctggcggccatcgccgatagccgcaagccttcgctggcgcgcttcatcttcgccctgggg
attcccgacgtcggcgaggaaaccgccaagctgctggcgcgttcgctgggttcgctcgag
cggatcggcaaggcgctcccggaagtgttgacctacctgccggacgtcggcgccgaggta
gcctacgagatccacaacttcttcgccgacgagcacaaccgccaggtgatcgcccagttg
cgcgatgccgaacatggcgtgcagttgcaggaagagggcgaggtcgccgcggagttcgcc
gcttgtgcctcgctggccggtttcatcgacaagctgaacattcccttcatcgccgccacc
ggcgcggaaaagctggccagccgcttcggttcgctcgacggcatcatccgcgccgactgg
ctcgatctacgccaggtggagcgtctgcccgagcgagcggcgaaaagcctgcgcgatttc
ttcgacgagccggccaacgtgcagcgtgccctggccatcgaggcgcagttgcgtgagttc
ggcatgcattggcagagcgagcgcaaggcggtcgaaggcctgcctctggccgggcagacc
tgggtgctgaccggcaccttggaggcgatgagccgggacgtggccaaggacaagctggaa
gggctcggcgccaaggtggccggctcggtgtcggccaagacccactgcgtggtcgccggg
cccggcgccggctcgaagctggccaaggccaacgagctgggcgtgaaggtgctcgacgaa
gacggcctgctgaaactgttcgacgagcacggcgtcgcccgctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (29)   

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