KEGG   Prunus avium (sweet cherry): 110750979
Entry
110750979         CDS       T05161                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
pavi  Prunus avium (sweet cherry)
Pathway
pavi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pavi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110750979
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pavi03041]
    110750979
Enzymes [BR:pavi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110750979
Spliceosome [BR:pavi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    110750979
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    110750979
SSDB
Motif
Pfam: AAA_22 nSTAND3 PWI AAA_19 Sigma54_activ_2 T2SSE AAA_7 TsaE Sigma54_activat ABC_tran AAA_30 AAA_16 AAA_29
Other DBs
NCBI-GeneID: 110750979
NCBI-ProteinID: XP_021807075
UniProt: A0A6P5RQD6
Position
Unknown
AA seq 454 aa
METHSNLKTWISDNLMALLGYSNIVVVQFIIRLTKEATSPAGVVDKLLDFGFSSSSEIGS
FSKEIFARVHHEASEREIASLVRKLQRTYDHLDADTDDYYESMKSYSKKRRYRKRVSSEE
DEDEEMEEERRVKRRTWSDECQDSSDSEEERLRDQREREQLERNIRERERDAAAATRKLT
KERLKQREAEEAFFRTNADVEALRKVSRQVYLKKREQKKLEEIIDDLEDMNCLFEGVKLT
EAEDNELSYKKQILELVKKQSDLDKAEFSVALQRYKELSSCDKTNSFSEQKSWEDQQIGR
ATLIFGSKDKKRSISQDEYEFVFGDQIEFIKASERESTDEFDDVQPVQPVHPFESRTKST
LEKLQEERKTLPVYSYRDELLQAVEKHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKIG
CTQPRRVAAMSVAARVSQEMGVKLGHEIWQAIVC
NT seq 1365 nt   +upstreamnt  +downstreamnt
atggagacgcacagcaatctaaagacatggatatcggataatttaatggccttgctcgga
tattctaacatcgtagttgttcagttcattattcggctaactaaggaagcaacatcaccg
gctggtgtggtggacaagcttcttgattttgggttttcctcatcgagtgaaatcggctct
ttttctaaagaaatcttcgcaagagtgcaccatgaagcatcagagagggaaattgctagt
ttggtgaggaagctgcagagaacatatgatcacttggatgcagatactgatgattattat
gagtccatgaaatcgtattcaaaaaagagacggtacaggaagagggtgtcgagtgaagaa
gatgaagatgaagaaatggaagaagaaagacgggttaaaagacgaacttggtcagatgaa
tgccaagatagttcagactcggaagaagaaagattgcgtgatcaaagggagagggagcaa
ttggagagaaatataagggaaagggaaagggatgcagcagcagccacaagaaagctaaca
aaggaaaggttaaaacaaagggaggcagaggaggcttttttcagaaccaatgctgatgtt
gaagctttgagaaaagtttcgagacaagtatatttaaagaaaagggagcaaaagaaactg
gaggagatcatagatgatttagaagatatgaactgcttatttgaaggtgtgaagctaacg
gaagcagaagacaatgaattaagttacaagaagcaaatattagagcttgttaagaaacag
tcagatcttgataaggctgagttctctgtggctttgcaacgctacaaggagctcagttct
tgtgacaaaacgaactcgttttcggaacagaaatcttgggaggatcagcaaattggaagg
gcaacactgatttttggttccaaagacaaaaagagatcaatatctcaggatgagtatgaa
tttgtgtttggagaccagattgagtttatcaaggcttcagagagagagagtacagatgag
tttgatgatgttcagccagtccaacccgtgcatccatttgagtctaggacgaaatcaacc
ttggagaagctgcaggaggagagaaaaacattaccagtctactcatatcgtgatgagtta
ctccaagcagttgaaaaacatcaggttcttgttattgttggtgaaactggatccggaaaa
actacacagataccccaatatctacatgaggctggatacacaaagcggggcaagattggg
tgcacgcagccacggcgagttgctgctatgagtgttgctgctagggtttctcaagaaatg
ggcgtcaagcttggacatgagatttggcaagctatagtgtgctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (26)   

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