KEGG   Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a291
Entry
PSEBR_a291        CDS       T01472                                 
Name
(GenBank) Putative ATP-dependent helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
pba  Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pba00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PSEBR_a291
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pba03019]
    PSEBR_a291
   03400 DNA repair and recombination proteins [BR:pba03400]
    PSEBR_a291
Enzymes [BR:pba01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PSEBR_a291
Messenger RNA biogenesis [BR:pba03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PSEBR_a291
DNA repair and recombination proteins [BR:pba03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PSEBR_a291
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind ResIII AAA_22 SNF2-rel_dom
Other DBs
NCBI-ProteinID: AEA66426
UniProt: F2KAS4
Position
368786..370714
AA seq 642 aa
MHSTLEQVFGYPQFRPGQEAAIGAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLKRHGIAAASIDSAQGRDEANDAMARARSGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQVLLLTATATPKVIADM
QAKFAIAAVDVVTTGFYRSNLNLLVEPVLGADKRARLVQWLGERAGQPSIVYVTLQRTTE
QIAEHLGRHGIEAEAYHAGLPHEQREDIQRRFMGGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELAGIRCVLDELQ
AAAPDGQWEFLLGPLADQSNIRQLPLKTLLVQLELRRLIAPRYAYFAEYRFKFLTEPQQL
LERFEGERRDFVSAIIQTSSRARAWATVNFDGMYQQYHAERNRVVNALDYFQEKGWIELE
SKQMTEVYSVLEGGLDTQVLSSELHAYFTRHEQGEIARIHAMLELFATDRCLGYRLAQYF
GDDNAPRECGHCSVCHGHIARLPEPPALPPLVDKNFEALCSDFIHKHEQHSGSVPSAERL
TRFLCGIGMPLFTRLKARKIRGYAALEAYPYAEVRQWAQAHL
NT seq 1929 nt   +upstreamnt  +downstreamnt
atgcacagcaccctggaacaggttttcggttatccacagtttcgtcccggtcaggaggcg
gccatcggcgccgtgctggccggtcggtcggcagcggccatttttcccaccggctcgggc
aagtccttgtgttatcaattgccggccctgctattgcctcatctgaccttggtggtctcg
ccactgctggcgctgatgcaggaccagttggcgttcctcaagcgccacggcattgcggcg
gcgagtatcgattcggcccagggtcgtgatgaagccaacgacgccatggcacgagcccgt
tcgggtgagttgaagatcctgatgatttctgtggagcgcctgaagaacgagcgctttcgc
aacttcttgcagcaggtgccgatctcgttgctggtggtggacgaggcccactgtatttcg
gaatgggggcataactttcgacctgactacctcaagcttcccgattaccagcgtgagttc
aatattcctcaggtcttgctgctgacggccaccgcgacacccaaggtcatcgccgacatg
caggcgaaattcgccatcgccgccgtggatgtggtgacaaccggcttctaccgctcgaac
ctcaatctgctggtcgagcccgtgctgggagccgacaagcgcgcacggctggtgcagtgg
ctgggcgaacgtgccgggcagccgagcatcgtctacgtgaccttgcagcgaaccaccgag
cagatcgccgaacacctgggccggcacgggatcgaggccgaggcctatcacgccggtttg
ccccatgaacaacgcgaagatatccagcggcggttcatgggcgggcaatccaattgcatc
gtcgcgaccatcgcttttggcatgggcatcgacaagagtgacattcgcaacgtcgtgcat
ttcgacctgcccaagtccatcgaaaactacagccaggagatcggccgcgccggtcgggac
gggcagccttccgattgcctggtgctggccaaccgcgacagtctcaacgtgctggaaaac
tttgtgtatggcgatacaccggagcttgcaggcattcgttgcgtgctcgatgagctgcag
gccgccgctcccgatgggcaatgggagttcttgctgggacccctggcggaccagagcaac
atccggcagttgccactcaagacgttgctggtccagttggagctacgtcggctgatcgcg
ccgcgctatgcctatttcgcggagtaccgcttcaagttcctgactgagccacaacaattg
ctggagcgcttcgaaggcgagcgaagggacttcgtctcggccatcatccagacctccagt
cgcgcccgggcctgggccacggtgaatttcgacgggatgtaccagcaatatcacgctgag
cgtaatcgcgtggtcaatgcgctggattatttccaggaaaaaggctggatcgagctggaa
agcaaacagatgaccgaggtgtacagcgtgctggaagggggcctggatacgcaggtcttg
agctccgagctacacgcctatttcacccggcacgagcaaggtgaaatcgcgcggatccac
gccatgctcgagttgttcgccaccgaccgttgcctgggttatcgcctggcgcagtatttc
ggcgatgacaatgcgccacgcgagtgcggtcattgctcggtgtgccatgggcatatcgct
cgcctgccggagccgccggcgttgccgccgcttgtggataaaaacttcgaggcgctgtgt
agcgactttatccacaagcatgagcagcacagcggcagcgtgccgtctgccgagcgcctc
acccgcttcctgtgcgggatcggcatgccgctgttcacccgattgaaggcgcggaaaatc
cgcggatatgccgcactggaggcgtatccatacgctgaagttcgtcagtgggcccaggcg
cacctgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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