KEGG   Limihaloglobus sulfuriphilus: SMSP2_02793
Entry
SMSP2_02793       CDS       T04749                                 
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
pbas  Limihaloglobus sulfuriphilus
Pathway
pbas03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pbas00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SMSP2_02793 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pbas03400]
    SMSP2_02793 (mfd)
Enzymes [BR:pbas01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SMSP2_02793 (mfd)
DNA repair and recombination proteins [BR:pbas03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      SMSP2_02793 (mfd)
SSDB
Motif
Pfam: DEAD TRCF Helicase_C UvrB_inter CarD_TRCF_RID ResIII AAA_22 RecG_dom3_C IstB_IS21
Other DBs
NCBI-ProteinID: AQQ72409
UniProt: A0A1Q2MIC3
Position
complement(3579657..3582944)
AA seq 1095 aa
MNYGRLKSINKLCRSLKKQGEKPELFFAEGSWGSFPSLLADILNTSTKRAVCIISPHIET
SENLCEDMPALTGRSGIYFPAWESEPDLTESADETGSERISIALKLDELKSGGKDKPAIF
TPVQALCQPLPSPESLKKSSLNLSVGQSIEFELIIEWLTDSGFESIDRVDIPGQFAHRGG
IIDIFCSNTQLKGGGPKTAGIDSPPVRIEFFGDVIESIRPFDLDTQLSGGDVAAVSITPP
TPSTSLAKSIQMLELLARDTIIILQEPASVQEVAELFCSRLSGVELFSWRQIAEKLNGFD
TVHLSSFGSGAPKSIRLNVESVQEYKTDSKDFFSGHKDTLQSLYKRAGEGTDIEFFCRNE
AERKRVSEIFTEQKLVLPKNFALRVGDISAGFILPEMPKIFIAHHEVFGQYSLRRRIRAS
HQGIPVESPLDLKPLDLVVHLSYGIGRYMGITEMDSGGGKSEFLTLKFADEVTIHVPVKH
ISLVHKYIGAAGAEPKLSKIGTRKWENQKQNVSDSLKDMAAELLELQAKRQGNSGIRFDP
DNDWQLEFEETFPYQETADQITAIHQIKEDMITERPMDRLLCGDVGYGKTELAMRAAFKA
VQSGMQVALLVPTTVLCAQHGRTFAQRFADYPVSIGVLNRFTTPLEKRRIINETARGQLD
ILIGTHRILSKDITFSNLGLIIIDEEQRFGVAHKEKLKMLRANVDILTMTATPIPRTLHM
SLIGLRDISSLQTPPLDRRSITTVVERYSDEAVKKALLRELSREGQVYFLHNRVKDIEKY
ANRICRLVPNASVEIAHGQMPKSKLEKAMTKFVLGKADILVSTTIIESGLDIPNANTIII
NNSDRFGLAQLHQLRGRVGRYRNKAYAHLLIPPERPIRPVAARRLKAIEEYSHLGAGFKI
ALRDLEIRGAGNILGPEQSGHINTVGFELYSRLLSNAVKQLKGEPVITSPMAAVNLGMPD
YIPRSYIPSDAQRMEIYRKIAESPETEDLTRLHEQLKDIYGPVPVQVRRIIDTAQIRLLA
SKWQIKSITLSGNSVVFTFPRNNPRTVSDSGGLFARTSAKVKIIDPYTIHLEFKPAAMEP
ETLISILRKILSQKR
NT seq 3288 nt   +upstreamnt  +downstreamnt
ttgaactatggcagactaaaatctattaacaagctctgccgctcactgaaaaaacagggt
gaaaagcctgagcttttttttgcggagggatcatggggttcgtttccttcgcttcttgct
gacattttaaatacaagcaccaaacgtgcggtatgtattatcagccctcacatcgaaaca
tcggagaatctctgcgaagatatgcccgcacttaccggccgcagcggaatatattttccc
gcatgggaatctgagccggatctaaccgagtcagccgacgaaaccggatcagagcggatt
tccatcgccctcaaacttgatgagctcaaatcaggcggcaaagataaaccggctatattc
acgcccgtgcaggcgctttgtcagccgctgccctctccggagagtctgaaaaaatcttct
ttgaatctttccgtcggccagagcattgagtttgagctgatcattgaatggcttacggac
agcggatttgaaagcattgaccgtgtcgatattcccggccagtttgcccatcgcggcggt
ataatagatattttctgctcgaatacccagctcaagggcggcggcccgaaaactgcgggg
attgattctccgcctgtcaggatagaattcttcggcgatgttatcgaaagcatccgcccc
tttgaccttgacacacagctctccgggggagatgtcgccgctgtgagcataaccccgcca
accccttcaaccagcctggcaaaatcgatacagatgctcgagctgctggctcgggataca
ataataatactccaggaacccgcttcggtgcaggaagtggcagagcttttctgttcacgg
ctcagcggcgttgagctcttttcctggcggcagatcgcagaaaaactaaacggcttcgac
accgttcatctaagcagcttcggttccggagccccaaaatcgatacgcctaaatgttgaa
tcggtacaggaatacaagaccgactcgaaggatttcttctccggacacaaggacaccctg
caatcgctttacaagagagccggcgaaggaacagatattgagtttttctgccgcaacgag
gcggagagaaaacgtgtcagcgagatattcaccgaacaaaagctggttttaccgaaaaat
ttcgctcttcgtgtcggagatatctctgcgggatttattctgccggagatgccgaaaata
ttcatcgcccatcatgaggttttcggccagtactcgctgagacggcgaataagggcatcg
catcagggaatcccggttgaaagcccgctggatttgaaacctctcgacctggttgtgcat
ttgagctacggcatcggcaggtacatggggataaccgagatggattccggcggcggcaaa
tctgaatttctgacactgaaattcgccgacgaagttacaattcacgtgccggtaaaacac
atttcgcttgtacataaatatatcggggctgccggagccgagccaaagctgagcaaaatc
ggtacccgcaaatgggaaaaccagaaacagaacgtttccgattcgctcaaagatatggcg
gcggagcttcttgaattacaggcaaagcgacagggcaacagcggcatcagattcgaccct
gataacgactggcagcttgaattcgaggagacctttccataccaggaaaccgcagaccag
ataaccgccattcatcagataaaagaggacatgataaccgagaggccgatggacaggctt
ttgtgcggcgacgtaggctacggcaagaccgaactggcaatgcgtgcggcgtttaaggcg
gttcaatccggaatgcaggtagccctgcttgtgccgacaactgtgctttgtgcccagcac
gggcgcacctttgcccagaggttcgcggactatccggtatcaataggtgttttgaacagg
tttaccacacctcttgaaaaacggagaatcataaacgaaactgcccgcggacagctcgac
attctcatcggcactcaccggattttgagcaaggacatcacattttcaaacctcgggctg
attataatcgatgaggagcagcgattcggcgtcgcccacaaggaaaagctcaaaatgctg
cgggcaaacgttgatatacttacgatgactgccacgccaataccgcgtacgctgcatatg
tcgcttatcggcctgcgggatatcagctcgctgcagacaccaccgctcgaccgcagaagc
attacgaccgtggtggaacggtacagcgatgaggcggtaaaaaaggcacttctgcgggaa
ctgagcagagagggccaggtgtattttcttcataacagggtaaaagatatcgaaaaatac
gccaaccggatatgccggcttgtgccgaacgcttcagttgaaatcgctcacggacagatg
ccaaagagcaagctcgaaaaggcaatgacaaagttcgtgctgggtaaggccgacatactt
gtaagcacgacaatcatagaatccgggctggatatccccaacgccaacacgataatcatc
aacaattccgacagattcggcctcgcccagctccatcagctccgggggcgtgtcggcaga
taccgcaacaaggcgtacgcccacctcctaataccgccggagcggccaatccgtccggtt
gccgcccgccggctcaaggcgatagaggaatactcacatctgggagctggattcaagata
gcgcttcgcgatttggaaatacgcggcgcgggcaacatacttggccccgagcagtcaggg
cacataaacaccgttggctttgagctttacagcaggctgttgagcaatgcggtcaaacag
ctaaaaggagaacctgtaataacatcaccgatggcggcagtcaatctcggaatgcccgac
tacatacccagaagctatatcccctcagatgcccagaggatggaaatataccgtaaaatc
gctgaaagccctgaaacagaagaccttacaaggcttcacgagcagctcaaggacatttac
ggccccgttccggttcaggttagaaggataattgacaccgcccagataaggctgctggcc
tcgaagtggcaaataaagagcataacactttcaggaaacagcgttgtgttcacttttccg
cgtaataatccaagaacggtatccgattcgggcggactctttgccagaacttcagcaaag
gtaaagataatcgacccctacacaattcatcttgaatttaagcctgccgcgatggagccg
gagactcttatcagtattttgagaaaaattcttagccaaaaacgctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (47)   

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