KEGG   Thiopseudomonas alkaliphila: AKN87_02500
Entry
AKN87_02500       CDS       T04152                                 
Name
(GenBank) hypothetical protein
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
pbb  Thiopseudomonas alkaliphila
Pathway
pbb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pbb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    AKN87_02500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pbb03400]
    AKN87_02500
Enzymes [BR:pbb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     AKN87_02500
DNA repair and recombination proteins [BR:pbb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AKN87_02500
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 PaaX_C AAA_11 Sororin AAA_25
Other DBs
NCBI-ProteinID: AKX44095
Position
507867..511607
AA seq 1246 aa
MSQTPLALQLPLQGSQLIEASAGTGKTYTISAVYLRLVLGHGTEQTAFARPLLPPEILVV
TFTDAATAELKDRIRQRLIEAAKVFRLPATSAELVSVDPLLIALRDDFAEQAWSSCAYKL
ELAAQWMDQAAISTIHAWCQRMLHEHAFDSGYLFKQTLETDFSELEQQVAEDYWREFCYP
LTGDLLEQVIAQWQSPAILLKQVRPLLGRIATQAKPVTSALTAVKQQAELQAKQQLHQLK
TQWQQALEAYWPTLEAAVQAKHLPKKHLEWLGFVQSWALDPQQATFKSTSASKRDLAWEG
FQAAWKGAAEQCPAPSFLVENWYAATLEQLDRLTSQLPEQLLKHAATWIAQRFEQEKQQR
SLMGFDDMLNRLDTALQGEDAQRLAETIRQQFPVAMIDEFQDTDPVQYRIFNQVYAIESN
QPETAILLIGDPKQAIYSFRGADIYTYLQARRATEGRHHTLDTNYRSSQAMVDAVNYLFA
QAEQREAKGAFLFDKSQHALPFHTVQAKGRAAKWTVNGEAAPALTCWLNENLTVNSEHYL
AEMAASCATEITRLLTLGQTQQAGFVTDETFHGLKPGDIAILVRSFNEAEAVRRELAERK
VRSVYLSDRDSVFSTSAAQDLWHWLNGFLHPQDDRLIRAALTTCSLNLSLPQLHSFVEDE
VLWEQQVLKFRRYYELWQKIGVLPAIRQFIHDYQLPEQLANDPQRERKLTDILHLAEVLQ
RASSELDSEWALLRFLEGLIDGDQRAADDYIVRLESDAELVKVVTIHKSKGLEYPLVFLP
FICRTRQLKKGEPYSYFDGQARQYCIHHDEESFALAEQDRQAEDLRLLYVALTRAQYACW
LGMADVSYYKKSVFHASGIGYLLNGLTPLAQAESLETVLTQHQQQFTAMQVLPAPTATAR
VYAGDETAQQQPIWLTPQRTVKEHWWIASYSALKLGTQLTELVNLPEPIEPETTHFNYQD
KSAQAGSEDSLVTELADQHEALAPFDDQLAVTLDKTIHQFPKGPTPGTFLHNLFEIAGEH
SFGYLLERPGELVQLLERRCAAFDWQDWVPTLTAWLSKALSCNLPITAEGGLRLKDLTQY
QVEMEFWFEAQRVNVLALDRLVQQYEFAGELRLPLEPDRLHGMFKGFIDLTFEHQGQYYV
ADYKSNWLGEDDTAYTQAAMQSAILQHRYDLQYVLYLLALHRLLKLRLPNYDYDQHIGGA
VYWFVRGIDADSRGVFSRKPPRQLIEQLDALFKGKAPEQLLTKELD
NT seq 3741 nt   +upstreamnt  +downstreamnt
atgagccaaacacctttagctttacagttacctttacagggcagtcagttaattgaagcc
agtgccggaacaggtaaaacctatactatttctgccgtgtatttacgtttagtccttggg
catggtaccgagcaaactgcttttgctcgtcctttattacccccagaaattttggtggta
acctttaccgatgcagccactgcagagcttaaagaccgtattcgccagcgtttaattgag
gcagctaaggtttttcgtttacccgctacttcagcagaactggtgtcggttgatccgcta
ttaattgcactacgtgatgattttgctgaacaggcatggagtagttgtgcctataagctg
gagctagctgcgcaatggatggatcaggcggccatttccaccattcatgcctggtgtcag
cgtatgctccatgaacatgcatttgatagcggctacctatttaagcaaaccttagaaacc
gatttttcagagctagagcaacaagtagcagaagattactggcgtgagttttgttatccg
ctcacgggtgatttactagagcaagtgattgcgcagtggcaatctcctgctattttgcta
aaacaagtgcgcccattattagggcgtattgctacgcaagcaaagcctgtaaccagtgct
ttaacagcggttaagcagcaggctgagttacaggctaagcagcagttacaccagttgaaa
acccagtggcaacaggctttagaggcatactggccaaccttagaagctgctgttcaggcc
aaacacttaccgaaaaaacacttagaatggttaggctttgtacaaagctgggcgcttgat
ccgcagcaggcaacctttaaaagcacgtcagcctccaagcgcgatctagcttgggagggc
tttcaagcagcctggaaaggtgctgccgaacagtgcccagcgcccagctttttagtggaa
aattggtatgctgctacgctcgagcagctcgaccggctaacaagccaattgccagagcaa
ctgcttaaacatgccgcaacttggattgcccagcggtttgaacaggagaagcaacagcgc
tcgctcatgggctttgatgacatgctcaatcgcctagacactgcattacaaggcgaagat
gcgcagcgtttagcggagacgattcgccagcaatttccggtagcgatgattgatgagttt
caggacaccgacccagttcagtaccgaatttttaatcaagtctatgccattgaaagcaat
cagccagaaaccgccattttgctgattggtgaccctaagcaagctatttatagttttagg
ggcgcggatatctatacctatttgcaagcgcgccgcgccacagaaggtcggcatcacacc
ttagacactaactatcgctctagtcaggcgatggtagatgcagttaattatttatttgca
caggctgagcagcgggaagctaagggcgcctttttatttgataaaagtcagcatgccttg
ccatttcacaccgtacaagccaaaggtcgtgctgcaaaatggacagttaatggtgaggct
gccccagccttaacttgctggctaaatgaaaacttaaccgtaaatagcgagcattatctt
gccgaaatggccgctagctgcgccactgaaattactcgcttactgacgttgggccaaact
cagcaagcggggtttgtgacggatgaaactttccacgggctaaagccaggtgacattgca
attttggtacgcagttttaatgaggcagaagctgtacgtcgtgagctagctgaacgcaag
gtgcgtagtgtctacttatctgatcgcgattcggtattcagtaccagtgcagcccaggat
ttatggcactggcttaatggctttttgcatccacaagatgatcgtttgattcgagcagcg
ttgaccacctgcagcttaaatttgtcattgccacagctgcactcctttgttgaggacgag
gtgctgtgggaacagcaagtgctaaaatttcgtcgttattacgaactttggcaaaagatc
ggtgttttgccggccattcgccagtttatccacgactaccaattgccagaacagctagcc
aatgacccacagcgcgagcgcaaactgaccgatattttacacctagcagaagtgctacag
cgtgccagcagcgagttagacagtgaatgggctttgctgcgctttttagaaggcttgatt
gatggcgatcagcgtgctgcagatgattatatagtgcgcttagaaagtgatgccgaactg
gtaaaggtggttactatccacaaatctaaggggctcgaatatccgttagtgtttttgccc
tttatttgtcgaacgcgccagctaaaaaaaggtgagccttacagctattttgatggccaa
gctcggcagtattgcatccatcatgacgaagaaagctttgcgctagcagagcaagatcga
caagccgaagacctacgcttactgtacgtcgcattaacccgtgcacaatatgcatgctgg
ttgggtatggcagatgtttcttattacaaaaaatcagtatttcacgcttctggcattggc
tacttactcaatggattaacgcctttagcgcaggctgaatcactggaaacagtactgact
caacatcagcaacagtttactgcgatgcaagtactgcctgctccgactgcaactgcaaga
gtttatgccggtgatgaaacagcgcaacagcagccgatatggctaacgccgcagcgcaca
gtaaaagagcattggtggattgcctcctacagtgcgcttaaattgggcacgcagctgact
gaattagtgaacctaccagaacctatcgagcctgaaaccactcactttaattaccaagat
aaatccgcccaagccggtagcgaagacagcttagtcaccgagctagccgatcagcatgaa
gccttagccccctttgatgatcagctagccgtaactttagataaaaccattcaccagttt
cctaaaggaccaacgcctgggacttttttacataatttatttgaaattgccggcgaacac
agctttggctatttgttggagcgccctggcgaattagtgcaactgcttgaacgtcgctgc
gctgcctttgattggcaagactgggtgcctacgctaactgcttggttaagcaaagctctt
agttgtaatttacccattactgctgaggggggcttgcgcttaaaagatttaactcagtat
caagtagaaatggaattttggtttgaagcacagcgggtgaatgtcttggcgttagatcgc
ttagtacagcagtatgagtttgctggtgagcttcgtttgcctttagagcctgatcgtttg
catggtatgtttaaaggatttattgacttaacattcgagcatcaaggccaatattacgtt
gctgattataagtctaattggttgggggaagatgacactgcctacacccaagccgccatg
cagtcggctattttacagcaccgctatgatttgcagtatgtgctgtatttgctggctttg
catcgcctgctaaaactacgcttgcccaattatgactatgatcagcatattggcggtgct
gtgtattggtttgtgcggggcattgatgctgatagtcgaggcgttttcagtcgtaaacct
cctaggcagcttatcgagcaacttgatgctttgtttaaaggcaaggcgcctgagcagtta
ttaactaaggagctggactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (42)   

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