KEGG   Thiopseudomonas alkaliphila: AKN87_03615
Entry
AKN87_03615       CDS       T04152                                 
Name
(GenBank) aromatic ring-opening dioxygenase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pbb  Thiopseudomonas alkaliphila
Pathway
pbb03030  DNA replication
pbb03410  Base excision repair
pbb03420  Nucleotide excision repair
pbb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pbb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AKN87_03615
   03410 Base excision repair
    AKN87_03615
   03420 Nucleotide excision repair
    AKN87_03615
   03430 Mismatch repair
    AKN87_03615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pbb03032]
    AKN87_03615
   03400 DNA repair and recombination proteins [BR:pbb03400]
    AKN87_03615
Enzymes [BR:pbb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AKN87_03615
DNA replication proteins [BR:pbb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AKN87_03615
DNA repair and recombination proteins [BR:pbb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AKN87_03615
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AKN87_03615
   MMR (mismatch excision repair)
    DNA ligase
     AKN87_03615
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AKN87_03615
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT
Other DBs
NCBI-ProteinID: AKX44279
Position
complement(742212..744554)
AA seq 780 aa
MTTHPLQDQVEQLRQQLNDYNYQYYVLDQPSVPDSEYDRLFNQLKQLEQAHPELISRDSP
TQRVGGQPLAAFTTVQHALPMLSLGNAFSEQEMQDFGRRIEQALASNEPLSFCCEPKFDG
LAVSLLYEQGELVRGATRGDGATGEDITSNVRTIRNIPLRLQGESVPERLEVRGEVYISL
AAFAELNQRMLETNTKPFANPRNAAAGSLRQLDPRITAQRPLTFCAYGVGLVSQPLADSH
SQTLQVLKQLGLPISPEMQVVQGIAGCNQYFAQLGAKRAELGYEIDGVVFKVDRLALQQQ
LGFRAREPRWAIAHKFPAQEELTELLDVEFQVGRTGAITPVARLKPVHVGGVTVSNATLH
NMDEVQRLGLKIGDTVIIRRAGDVIPQVTQVVLERRPAAAREISMPSECPACGAEVERSQ
LARHSKGKTIRSEGATWRCVGRLTCPAQLKQALLHFVSRKAMEIDGLGEKIIDQLVDRGL
VKSPADLYLLTAEQLLTLEGFAELSTQNLLNAIEASTQPSLARFIYALGIPNVGEETAKL
LARSLGGLTRISQALPSLLSWLPEVGNEVAHEIYNFFQDAHNLAVVSQLQTNGVKLPKAE
AIAPELVGAVSFAEFIERFNLPGIAKTNAQRLAKAFTSFAALKAADWLDLRSIERFPERS
AQVLREFLADSEQLKQADQLEQQLLAFGMHWSVQPSVEAPSLPLQGETWVLTGTLSSLSR
AQGKQALEALGAKVAGSVSSKTSAVVAGESAGSKLTKAQELGIKVLDEAAFIELLQRLQG
NT seq 2343 nt   +upstreamnt  +downstreamnt
atgacgacacatccattacaggatcaagttgagcaattgcgtcagcaattaaatgactat
aactatcaatattatgtattggatcagcccagtgttcctgatagtgaatacgatcgatta
tttaatcaattaaagcagctagagcaagcacatcccgagttaatcagccgtgattcaccg
acccagcgtgtgggtggtcagccattggcagcttttactacagtgcagcatgcgctgccg
atgttaagcctaggcaatgcattttctgagcaggaaatgcaagactttggtcgcagaatt
gaacaggcattggcgagcaatgagccgttaagtttttgttgtgagccaaagttcgatggg
ttggcggtgagtctgttgtatgagcagggtgagttagtgcgtggcgcaacccgaggtgat
ggcgcgacaggtgaagatattaccagtaatgtacgaacgattcggaatattcctttacgc
ttacagggtgaatcagtgcccgagcgcttagaggtgcgtggcgaagtttatatttcgcta
gctgcttttgctgagttgaatcagcgcatgttggaaaccaatactaaaccctttgccaat
ccacgtaatgcggcagctggcagcttgcgccagttagatccgcgcatcactgcccagagg
ccgctaactttttgtgcctatggcgttggcttagtcagccaacctttagccgatagccat
agtcaaacacttcaggtattaaaacagttaggtttaccaatcagtcctgaaatgcaggtg
gtacaaggtattgcaggctgtaatcagtattttgcccagctcggcgctaagcgcgctgag
ctaggctatgaaattgatggggtggtatttaaggtcgatcgcttagccctgcaacagcaa
ttgggtttcagggcgcgagagccacgctgggcgatcgcccataagtttcctgctcaagaa
gagctgacagagctgttagatgtagagtttcaggtcggacgcaccggtgcgattaccccg
gtggcacgtctaaaaccagtgcatgtggggggcgtaaccgtgtccaatgcaaccttgcat
aatatggatgaggtgcagcgcttaggccttaaaattggtgatacagtgattattcgtcgg
gccggtgatgttattccacaggtaacccaggtagtgctagagcgcaggcctgcagccgcg
cgtgagatcagcatgccaagcgagtgcccagcttgtggtgcggaagtagagcgtagccag
ttagcgcggcatagcaaaggaaaaaccattcgtagtgaaggggcgacctggcgctgtgtc
gggcgtttaacttgtccagctcaactcaagcaggccttgttgcactttgtctcacgcaaa
gccatggaaattgatgggctgggagaaaagattattgatcagctggtcgatcgtggttta
gtgaaatcgcctgcggatttatatctactgactgccgagcagctcttgacgcttgaaggt
tttgcggaactatcgacgcagaatctactcaatgcgattgaggccagtacccagccgagt
ctggcgcgttttatttatgcgttaggtattccgaatgtgggtgaagaaacggctaagtta
ctggctcgttccttgggaggtttgactcgtattagtcaagcgctgcctagtttgcttagc
tggttgccggaagtgggcaatgaagtagcccatgaaatttataacttttttcaagacgcg
cataatctggctgttgtttctcagctgcaaacaaatggtgtgaagttacctaaggcagag
gctattgcgccagagttagtcggagcggtgagttttgctgaatttattgagcgttttaac
ttaccaggtattgctaaaactaatgctcagcgtttggctaaggcgtttactagttttgct
gcgttaaaagctgctgattggctggatttacgtagtattgagcgctttcccgaacgctct
gcccaggtcttgcgtgagtttttggccgatagcgagcaactcaagcaggctgatcagctc
gagcagcagttactagcctttggtatgcactggagcgtacagccgtctgtagaggcaccc
agtttacctttgcagggtgaaacctgggtattaaccggtaccttaagtagtttgtctcga
gcccaaggtaaacaggctttggaggctttaggggctaaggtggcgggatcagtatcgagt
aaaaccagtgctgtggtggcgggtgaaagtgcgggatctaagctaactaaagctcaagag
ttagggattaaggtgctggatgaggctgcttttatcgagttgctgcagcgcttgcagggc
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (49)   

Download RDF
DBGET integrated database retrieval system