KEGG   Paenibacillus borealis: PBOR_32895
Entry
PBOR_32895        CDS       T03324                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pbd  Paenibacillus borealis
Pathway
pbd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pbd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PBOR_32895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pbd03021]
    PBOR_32895
   03400 DNA repair and recombination proteins [BR:pbd03400]
    PBOR_32895
Enzymes [BR:pbd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PBOR_32895
Transcription machinery [BR:pbd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PBOR_32895
DNA repair and recombination proteins [BR:pbd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PBOR_32895
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid
Other DBs
NCBI-ProteinID: AIQ61162
UniProt: A0A089LJT8
Position
complement(7411258..7414869)
AA seq 1203 aa
MLDVNNFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DIDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGTFYLTMDNKEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP
VKALGKTNFTEAQQNALLITTVGKIIFNEIYPSSFPYINEATKTNLLQGTPEKYFIYEKG
ADVRELIMAAPEASAVGKEYLGLIIARCFETYHTTKTSVILDKIKQLGFTYSTRSGVTVA
VSDVIVPEEKATILKESEAKVDVVANQYRRGLITNDERYDRVIEIWSKTKDELTNVLLKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKANFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFTVSRIQDGKEVIEDL
YDRIEGRYSFETVRHPETKEIIVHRNDLIDSDKAEEIVNSGVTKLQIRSVLSCRARHGVC
KKCYGRNLATGKFVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEIRETKDRREIEVQGEAESKTYSITYGSRLRVSEGQEIEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI
IDAGDTTLLPGAFADIHEYEAANKEAILAGNEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDKLLGLKENVIIGKLIPAGTGMNRYRNVKLSDPNEESKQAALETV
PAE
NT seq 3612 nt   +upstreamnt  +downstreamnt
ttgttggacgttaacaattttgaatttatgaaaatcgggctcgcttccccggaaaaaatt
cgttcttggtcccgcggagaagtaaaaaaaccggagaccattaactatcgtactttgaaa
ccggaaaaagagggtcttttttgcgaacgcatcttcggaccgcaaaaagactgggaatgt
cactgtggtaaatacaaacgcgtccgttataagggcgttgtgtgcgaccgctgcggcgtg
gaagttacccgcgctaaagtccgccgcgaacgtatgggccacatcgagctggcagctccg
gtatctcatatctggtatttcaaaggtattccgagccgtatgggtctggcactggatatg
tctccgagatcgcttgaagagattatctactttgcatcttatgttgtaaccgatccgggt
gaaactcctctggagaagaaacaactgctgtctgagaaagaataccgcagctaccgtgag
aaatacggctacgggttccaggccggcatgggtgctgaagccgtcaaaaagctgcttcag
gatatcgatatcgataaagaactggaattcctcaaagaagagctgcgcacggcccaaggc
cagcgccgcaaccgggcgatcaaacgtctggaagttattgaggctttccgcaactccggc
aacaagcctgactggatgatcatggatgtgctcccggtcattcctccggagcttcgccct
atggttcagctcgacggcggccgttttgctacgtctgaccttaacgacctgtaccgccgt
gtaattaaccgtaacaaccgtctgaagagactgctggatctcggtgctcctgatattatc
gtgcagaatgagaaacggatgcttcaggaagctgttgatgccctgatcgacaatggccgc
cgcggccgtcctgtaacaggtcctggtaaccgtccgctcaaatcgctcagccatatgctg
aaaggtaaacaagggcgtttccgccagaacttgcttggtaagcgcgttgactattccgga
cgttccgttatcgtcgtagggccttacctcaagatgtaccaatgcggtcttcctaagaag
atggcactggaactcttcaaaccgtttgtaatgaaagaattggttaataagggccttgcc
cacaacatcaagagcgcgaaacgcaaggttgagcgcgtaagtcctgaagtctgggatgta
cttgaagaagtaatcagagagcatccggttctgctgaaccgtgctcctacactgcataga
ctgggtatccaggcgtttgaaccgattttggtagaaggtcacgcgatccgtcttcacccg
ctcgtatgtacggcgtacaatgccgactttgacggtgaccagatggcggtacacgttcct
ctatccgctgaagctcaagctgaagcccgtattctcatgttggcatccggtaacattctc
aaccctaaagatggtaagccggttgttacaccttcccaggatatggtccttggtacattc
tatctgaccatggacaacaaggaagaaaaaggaacaggcatgattctgcgtaccgtgaac
gaggctgtttcagcttaccaacgcggaaccgctggtctgcatgcgcgtgtagctattcct
gttaaggcactgggtaaaaccaactttacagaggcacagcagaatgcattgctgattaca
acggtgggtaagattatcttcaacgaaatctatccaagcagtttcccatacatcaatgaa
gctaccaaaactaacctgctgcagggtacaccagagaagtacttcatctatgaaaaaggc
gcggatgtccgtgaattgatcatggctgctccggaagccagtgctgtaggtaaagaatat
ctgggcttaatcattgcccgctgcttcgaaacctaccacactaccaaaacttcagtgatt
ctggataaaattaagcaactcggctttacgtactctacacgttccggtgttacggttgcc
gtatcagacgttatcgtgcctgaggaaaaagctacaattcttaaagaatccgaagctaag
gttgatgtagtagcgaatcaataccgccgtggtctgattaccaatgatgaacggtatgac
cgtgttatcgagatctggtcgaagactaaggatgaacttacgaacgtcctgctgaaatcg
atggaccgtttcaactccatcatgctcatggttgactccaaagcgcgtggtaacaaatcg
cagatcacccagctcggtggtatgcgtgggctgatggctacaccttcgggccggattttc
gaattgccaatcaaagcgaacttccgtgaaggtctgaccgtcctcgagtactttatctcc
actcacggagcgcgtaaaggtctggccgatacagcgctgcgtacagcggattccgggtac
ttgacacgccgtctcgttgacgtggcacaggatgtcatcgtccgtgaagaagattgcggt
actgataaaggcttcactgtcagccggattcaagatggtaaggaagttatcgaggatctc
tacgaccgtattgaaggccgttattccttcgagactgtccgtcatccggaaacgaaggaa
atcatcgttcaccgtaacgatctgattgactctgacaaggctgaagaaattgtgaattct
ggtgttaccaaactgcagattcgctctgtactgagctgccgtgcccgtcatggtgtctgc
aagaagtgctacggacgtaacctggcaacaggtaaattcgtggaaattggggaagctgtc
ggcattattgccgcacaatccatcggtgaaccaggaacacagcttaccatgcgtacattc
cataccggcggtgttgccggagacgatatcacgcaaggtttgccgcgtatccaggagttg
tttgaagcccgtaaccctaaaggtcaggcgacaatcagtgaaattgacggggtagttaag
gaaattcgtgaaactaaggaccgccgtgaaatcgaagtccagggtgaagcagagtccaag
acctattccatcacttacggttcccgtctgcgtgtcagtgaaggccaggagattgaagcc
ggcgatgaattgacagacggttctatcgaccctaaagaaatgctgcgtatcaaagggatc
cgcggggtacagaactacattctgcaagaagtacagcgtgtataccgtaaccagggcgtt
gagatcaatgataagcacattgaagttatgattaagcagatgctgcgcaaaatccgtatc
atcgatgccggagacaccactctcctgccgggtgcttttgcggatattcatgaatatgaa
gcagccaataaggaagccattctggccggtaacgagcctgcggttgctaagccagtgctg
ctcggtattaccaaagcctctttggaaacagactccttcctgtctgcggcttctttccag
gaaactacccgcgtcttgacggatgcagcgattaagggtaaagtggataagttgctcggt
cttaaagaaaatgttatcatcggtaagctgattcctgcaggtactggcatgaatcgttac
cgtaatgtgaagcttagtgatccgaatgaagaaagcaagcaagccgctttagaaacggtt
ccagctgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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