KEGG   Parvularcula bermudensis: PB2503_09699
Entry
PB2503_09699      CDS       T01298                                 
Name
(GenBank) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
  KO
K01928  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
Organism
pbr  Parvularcula bermudensis
Pathway
pbr00300  Lysine biosynthesis
pbr00550  Peptidoglycan biosynthesis
pbr01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:pbr00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    PB2503_09699
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    PB2503_09699
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:pbr01011]
    PB2503_09699
Enzymes [BR:pbr01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.13  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
     PB2503_09699
Peptidoglycan biosynthesis and degradation proteins [BR:pbr01011]
 Precursor biosynthesis
  Amino acid ligase
   PB2503_09699
SSDB
Motif
Pfam: Mur_ligase_M Mur_ligase_C Mur_ligase LpxD
Other DBs
NCBI-ProteinID: ADM09992
UniProt: E0TDS6
Position
1937129..1938571
AA seq 480 aa
MRLSDLIPLDGHLDAEITGLTADSRQVKPGFLFAALPGETTDGRRYIDQAIAAGAAAILA
PTGTTATVPVLADDNPRQALAMLAARFHAGQPKCIVGVTGTNGKTSVARFVAQLWSAFGH
SAGTVGTLGASAPGYDYALRHTTPDPVELHQVISTMAAMGTTHLAMEVSSHGLAQHRADG
VRFSHAGFTNITQDHLDYHPSFEAYFAAKMRLLTALLPETGQAVITTDGAGAEGAIEAAQ
GAGRRVLTVGRRGETLKLLSCVPHQGGLALTVSVEEGPAQSVALSLIGDFQADNALVAAG
LVIASGAEPEAVIEAMAKLSAAPGRMQPAGQKSCEGGMASAFVDYAHTPDAIATALRAIK
PHVPGGRVVVVIGAGGDRDRTKRPLMGRAAAAGADLVIVTDDNPRSEDPAAIRSQVAEGA
PGAQIIGGREAAIRAGAEALKAGDVLLVTGKGHEQTQTIGHVTYPFDDVSTTLAAMGGEG
NT seq 1443 nt   +upstreamnt  +downstreamnt
atgcgtttgtccgacctcatccccctcgacggccatctggatgcggagattaccggcctg
acggcggattcccgtcaggtgaagccaggctttctctttgcggccctgccgggggagacg
accgacggtcggcggtatatcgatcaggccattgcggccggggcggcggccatcttggcg
ccgacagggacgaccgcgacagtccccgtcctggccgacgacaatcctcgccaggcgctg
gctatgctggccgcccgttttcacgcgggccaaccaaagtgcattgtcggcgtgaccggt
acgaacgggaagacctccgtcgcgcggttcgttgcacagctttggtcggcttttggccat
tctgcgggcacggtcggcaccttgggggctagcgccccgggctatgattacgcgctgcgc
cacacgacccccgatcccgtggagctgcaccaggtgatctccaccatggcggcgatggga
acgacccatctggcgatggaagtgtcctcccacggtcttgcccaacatagggccgacggc
gtccgattttcccatgccggctttacgaatattacccaggaccatctcgattatcatcca
agctttgaggcctatttcgccgccaaaatgcgcctactgacggcccttcttcccgagacg
ggccaagcggtgatcaccaccgacggtgccggcgcagagggggcaatcgaggccgcgcag
ggggcgggcagacgggtgctgaccgttggacggcgcggcgagacgctcaagctcttatcg
tgtgtgccccatcaaggcggattggcattgacagtgtccgtcgaggagggccccgcccag
agtgtcgcgctttcattgatcggtgatttccaggcggacaatgctcttgtggcggcgggg
ttggtcatcgcgtcgggggcggagccggaggcggttatcgaggcgatggccaagctctcc
gccgcgccggggcgtatgcagcccgccgggcaaaaatcatgtgagggggggatggcatcg
gcctttgtcgattatgcccatacccccgatgccattgcgaccgccttgcgggccatcaaa
ccccatgtccccggcgggcgtgtggtggtggtgatcggggccggcggtgatcgcgaccgg
accaaacggcccttaatggggcgggcggcggcggcgggcgccgatctggtcattgtcacc
gacgacaatccgcgttctgaagacccagcggcgatcagatcccaggtcgccgagggcgcc
cccggggcgcagatcatcggcgggcgcgaagcggcgatcagagcgggggccgaggccttg
aaggcgggggacgttctcctggtgaccggcaagggccatgagcagacccagaccatcggc
cacgtgacctatcccttcgatgatgtgtcgacgacccttgcggccatgggaggtgaggga
tga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (37)   

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