KEGG   Rubinisphaera brasiliensis: Plabr_0027
Entry
Plabr_0027        CDS       T01431                                 
Name
(GenBank) protein of unknown function UPF0027
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
pbs  Rubinisphaera brasiliensis
Brite
KEGG Orthology (KO) [BR:pbs00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pbs03016]
    Plabr_0027
Enzymes [BR:pbs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     Plabr_0027
Transfer RNA biogenesis [BR:pbs03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    Plabr_0027
 Prokaryotic type
   tRNA splicing ligases
    Plabr_0027
SSDB
Motif
Pfam: RtcB HofP
Other DBs
NCBI-ProteinID: ADY57659
UniProt: F0SLH6
Position
complement(38984..40372)
AA seq 462 aa
MNKRQLAALGIPDYALAEALQAVQQAVSARGMRGKELKESFRQLVDTPDTFTEDEVFGPL
AKILIEEPDEPEREPISYQTWGSEIDDLSHEQMRQACQLPGAVGAALMPDAHVGYGLPIG
GVLALEGKVVPYAVGVDIACRMKLSVFDLPVDSLQTQRENLKNALEKGTRFGVGSKWDRP
QQHDVLDRDWTITKVTRENKDKAWKQLGTSGSGNHFVEFGILTLDEADDELGLQPGQYLA
LLSHSGSRGTGASVCNTYSSIAQANLSKRDKRHGRLAWLDLDTQAGQEYWAAMNLMGDYA
AANHAVIHKNVYKLIGGQLLAGVENHHNFAWKETHQGKEVIVHRKGATPAGAGVLGVIPG
SMADPAFVVRGKGNAASLHSASHGAGRRMSRTKAKSQFNFGSIRKTLRERGIDVLSAGAD
EVPGVYKNIEAVMAEQQDLVTPIARFDPKLVKMCGDGSRAED
NT seq 1389 nt   +upstreamnt  +downstreamnt
atgaacaaacggcagctcgccgctcttggtattcccgattacgccctggccgaagcgctg
caagcggtgcagcaggcggtttctgcgcgggggatgcgtgggaaagaactgaaagagtct
ttccgtcagctcgtcgatacgcccgacaccttcaccgaagacgaggtgtttggtcctctc
gcgaaaattctgatcgaagagccggacgaacctgagcgcgagccgatcagctaccagacc
tggggaagcgaaattgatgacctcagccacgagcagatgcgccaggcgtgtcagctgccg
ggggcggttggggctgcgctcatgcccgatgcccatgtcggttacggcctgccaattggt
ggggtgctcgctctcgaagggaaagtggtgccgtacgccgtcggggtcgatatcgcctgc
cggatgaaactgtccgtcttcgatttgccggtcgacagcctgcagacgcagcgtgagaac
ctgaaaaacgcccttgaaaaagggacgcggttcggcgtgggttccaaatgggatcggccg
cagcagcacgacgtgctcgatcgcgactggacaatcaccaaagtgacccgggagaacaaa
gacaaagcctggaagcagctgggaacgtctggctccggcaaccacttcgtcgaattcgga
atcctcacactggacgaagcggacgacgaactcggtctgcagccgggacagtatctggcg
ctactcagccacagtggatctcgcggaacgggggcgtctgtctgcaatacgtattccagc
attgcgcaggcgaatctgtccaagcgggacaaacggcacggccgactcgcctggctcgat
ctcgatacgcaggccggtcaggaatactgggccgcgatgaacctgatgggcgactacgcc
gccgccaaccatgcggtcattcataagaacgtctacaaactgattggcggtcagctgctg
gccggcgtggagaatcatcacaacttcgcctggaaagaaacgcatcaggggaaagaggtg
atcgtgcatcgcaaaggggcgacgccagccggcgcgggcgtgctcggcgttattcccggc
tccatggccgatcctgcctttgttgtgcgcgggaagggaaatgcagccagcctgcattcc
gcgtcccacggagccggccggcggatgtcccggacgaaagcgaaaagccagttcaacttc
ggctctatccgcaagacgctgcgcgaacggggaatcgatgttctttctgctggagccgac
gaagttcccggcgtctataagaacatcgaagcggtcatggccgagcaacaagacctcgtc
acccccatcgcccgctttgatccgaagctcgtcaaaatgtgcggcgatggaagtcgggcg
gaagattga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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