KEGG   Sedimentisphaera cyanobacteriorum L21-RPul-D3: L21SP3_00052
Entry
L21SP3_00052      CDS       T04695                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
pbu  Sedimentisphaera cyanobacteriorum L21-RPul-D3
Brite
KEGG Orthology (KO) [BR:pbu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pbu03032]
    L21SP3_00052 (topA)
   03400 DNA repair and recombination proteins [BR:pbu03400]
    L21SP3_00052 (topA)
Enzymes [BR:pbu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     L21SP3_00052 (topA)
DNA replication proteins [BR:pbu03032]
 Prokaryotic type
  DNA Topoisomerases
   L21SP3_00052 (topA)
DNA repair and recombination proteins [BR:pbu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      L21SP3_00052 (topA)
SSDB
Motif
Pfam: Topoisom_bac zf-C4_Topoisom Toprim Toprim_4 HVO_2753_ZBP Toprim_2
Other DBs
NCBI-ProteinID: AQQ08276
UniProt: A0A1Q2HM43
Position
74802..77261
AA seq 819 aa
MKNLVIVESPAKAKTINKYLGSEFEVKASMGHIRDLPSKGINVDIENGFQPTYDITPGKK
KLVGQLRSAAKKSENVYLATDLDREGEAIAWHLAEVLGVSEEHTYRVVFNAITKNSIKQA
FSDPSKLDMAKVNAQQARRILDRIVGYQISPLLWKKVAGGLSAGRVQSVAVKIVAEREKE
IRAFNPEEYWLIPAVFTTDLDESAGQGAHKYAESWQKLNAGEKKPSRPELADWFEQHNAF
KAELARVGGKKFGAKNQQQAEEIFQSLSGRDFTVSSVEKKESRSRPLPPFITSTLQQAAS
NRSGFGAKRTMRIAQSLYEGVDLGGLGTIGLITYMRTDSTYLSPEALSAGRKYIGEQLGA
DYLPEKPNFYASSKAAQEAHEAIRPTDPSITPQQARPHLSDEQFKLYDLIWRRFIASQMT
PAKWFITSVKVSAKAEVGECEFRASGRMLAFEGFTKIWQNRSTEQQLPEMKEGQKLAPVD
LKPEQHFTKPPARYTEASLVKALEKEGIGRPSTYASIISTIQDRKYVEQIDKKLRATDLG
IVVTEKLEGFFPEIMDIAFTRQMEENLDGIEENSNDWVKVLEEFYGPFSSRLEQAQEQMK
HAKAETTPSDYDCPKCGAKLEYRFGKNGKFLSCSKYPECKFACPCDSDGKPVKEEKSGHK
CPNCGKDMVVKTGRYGKFLGCEDYPKCKTVMKIDKEGNVLPPAPPPEPTGIRCHKCKSGE
LVVRQSKRGPFLGCNKFPRCRNIISIKMLDKLKELQAEGVWPPDTIEEADEILGRKTSGT
KKAAKKSTKKTTKKTTKKAAKKTTKKAAKKTAAKKKTSE
NT seq 2460 nt   +upstreamnt  +downstreamnt
atgaaaaatcttgtgatagttgagtcgccggcgaaggcgaaaacgataaataaatatctc
ggttcggagtttgaggttaaggcctcaatggggcatattcgcgaccttcccagcaagggg
atcaacgtggatattgaaaacggcttccagcctacctacgacataactccgggcaagaag
aagctggtcggccagctcagaagcgctgcgaaaaagagcgagaacgtgtatctggcaaca
gacctcgaccgggagggtgaggcgattgcttggcatctcgctgaggttcttggcgtttcc
gaagagcatacataccgcgttgttttcaatgcgataacgaaaaattccatcaagcaggcc
ttctcagacccttccaagctggatatggcgaaggtgaacgcccagcaggcaaggcgaatt
ctcgacaggatcgtcggctatcagataagtcctctgctctggaagaaggttgcaggaggc
ttgagtgcggggcgcgttcagtctgttgcggtgaagatagttgccgagcgtgagaaggag
attcgtgctttcaatccggaggagtactggctcatacctgcggtttttacaacagattta
gacgaatccgccggccagggagctcataaatacgccgagagctggcagaagcttaacgcc
ggcgagaagaagcccagccgtcctgagcttgcagactggttcgaacagcataacgccttc
aaggccgagcttgccagagtgggcgggaagaaattcggagcgaaaaaccagcagcaggcc
gaagagatcttccagtctctcagtggacgggattttaccgtcagcagtgttgagaagaag
gaatctcggtcgcggcctctgcctccatttatcacctccacgctccagcaggccgcctcg
aaccgcagcggcttcggggcaaaacgcacgatgcgaatcgcccagagcctatacgaaggc
gttgacctcggcgggctcggaactatcgggctgattacctacatgcgtaccgacagcaca
tacctatcgcctgaagctctaagcgctggacgcaagtatatcggtgagcagctcggggct
gattatctgcccgagaaaccgaatttctacgcatccagcaaggccgctcaggaggctcac
gaggccatcaggcctaccgatccgtctattacgcctcagcaggcaaggccgcacttgagc
gatgagcagtttaagctttacgacctcatctggcggaggtttatcgcctcgcagatgacg
cctgcgaaatggttcatcacatctgtaaaggtatctgcgaaggcggaggttggcgaatgc
gaattcagggcgtccggcaggatgctcgccttcgagggcttcacgaagatctggcagaac
cgctccacagagcagcagcttcccgagatgaaggaaggccagaagctcgcaccggttgat
ttaaagcccgagcagcactttactaagccgcctgcaagatacactgaagcctcgcttgtg
aaggcgctggagaaggaaggcatcggacggccgagtacgtatgcatcgattatctccaca
atacaggacaggaaatacgttgagcagatagacaagaagctccgtgcaactgatctgggg
attgtggtaacagagaagcttgaaggcttcttccctgagattatggatatagcattcacc
cgtcagatggaggaaaatctcgacgggatcgaagagaacagcaacgactgggtgaaggtg
ctggaggagttttacgggcctttcagcagtcggctcgagcaggcgcaggagcagatgaaa
cacgccaaagccgaaacaacgcccagcgattacgactgtcccaaatgcggggcgaagctt
gaataccgcttcgggaagaacggcaaattcctcagctgttcgaagtatcccgaatgcaaa
tttgcgtgcccgtgcgattcagacggcaagcctgtgaaggaggagaaaagcgggcacaaa
tgcccgaactgcggtaaggatatggttgttaaaaccggccgctacggcaagttcctcggc
tgcgaggactatccgaaatgcaagacggttatgaagatcgacaaggaaggcaatgtcctg
ccgccagcaccgccgccggagccgacgggaataagatgccataagtgtaagagcggcgag
cttgttgtgcgtcagagcaaacgcgggccgtttcttgggtgtaataagtttccaagatgt
cggaatataatcagcatcaagatgctcgataaactcaaagagcttcaggcagagggcgtt
tggcctcctgatactatcgaagaggctgacgagatcctcggaagaaaaacctccggcaca
aagaaggcagccaagaaatcgactaagaaaacaaccaagaaaacaactaagaaggcagcc
aagaagaccacgaaaaaggctgcgaaaaaaactgccgccaagaagaaaacctcagaatag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (83)   
   KEGG ORTHOLOGY (1)   
   RefGene (80)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (96)   

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