KEGG   Pseudoalteromonas sp. Bsw20308: D172_012395
Entry
D172_012395       CDS       T04175                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
pbw  Pseudoalteromonas sp. Bsw20308
Pathway
pbw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pbw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D172_012395
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pbw03019]
    D172_012395
   03016 Transfer RNA biogenesis [BR:pbw03016]
    D172_012395
Enzymes [BR:pbw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     D172_012395
Messenger RNA biogenesis [BR:pbw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     D172_012395
Transfer RNA biogenesis [BR:pbw03016]
 Prokaryotic type
  tRNA degradation factors
   D172_012395
SSDB
Motif
Pfam: RNase_PH S1 RNase_PH_C PNPase KH_1 KH_2 S1_2 aRib DUF3016 SLS1_KH2
Other DBs
NCBI-ProteinID: ALQ08778
Position
complement(2824143..2826269)
AA seq 708 aa
MQAIIKEFQLGQHTVTLETGAIARQADGAVLVSIGDTSVLVTVVGKREAQPGQDFFPLTV
NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVN
PEIQPDMVAMIGTSAALAISGIPFSGPIGAARVGYINGEYVLNPTLKELEESQLDLVVAG
TDKAVLMVESEANVLAEDVMLGAVVYGHEQSQAIITAIEEFKAQAGKPTWDWTAPEKNVA
LEDKVATIAADKVGAAYLITDKVARKEALGEAKDEVVAVLTAELAEGESLDKQEIGKIFG
SLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT
ERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGISAVMPTL
TEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDEKFVVL
SDILGDEDHLGDMDFKVAGTAAGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMD
EAISAPSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIA
ATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTER
VNNVADHLSEGQEVKVKVLEVDRQGRVRLSIKEAMESAAPAADAPTDA
NT seq 2127 nt   +upstreamnt  +downstreamnt
gtgcaagcaattattaaagaatttcaactaggtcaacacacagtgacactagaaactggt
gcaatcgctcgtcaagccgacggcgcagtactagtaagcattggcgatacttcagtttta
gtaactgttgtaggtaagcgtgaagcacaaccaggtcaagactttttcccattaacggta
aactaccaagagcgtatgtacgctgctggtcgtatcccaggtggtttcttaaagcgtgaa
ggtcgtcctaacgatggcgaaacacttattgcacgtcttattgaccgtccaattcgtcca
cttttcccaagcggttttgtaaacgaagtacaagttattgcaactgttgtttctgttaac
cctgaaatccaaccagatatggttgcgatgattggtacttcagcagcacttgctatctct
ggtatcccgttcagtggcccaattggtgcagctcgcgttggttacatcaacggcgaatat
gtacttaaccctacattaaaagagcttgaagaaagccaacttgatttagtggtagccggt
actgataaagcggtacttatggttgaatcagaagctaacgtacttgctgaagacgtaatg
cttggtgctgttgtatatggtcatgagcaatctcaagcgatcatcactgcaatcgaagaa
tttaaagcgcaagcaggcaagcctacttgggattggactgcacctgagaaaaatgttgca
cttgaagataaagtagcaactatcgctgctgataaggtaggcgcagcttacttaatcact
gataaagtagcgcgtaaagaagcacttggcgaagcgaaggatgaagttgttgcagtatta
acagctgaacttgctgaaggcgagtctttagacaagcaagaaattggcaaaatcttcggt
tcacttgagaagaaaatcgttcgtggccgtatcgctgctggcgaaaaacgtatcgatggt
cgtgaaccagatatgattcgtgcactagacgtaatgactggcgtattaccgcgtactcac
ggttctgctatctttacacgtggcgaaactcaagcgttagtaacagcgacacttggtaca
gaacgtgattcacagttaatcgacgatttaacgggtactcataaaaaccactttatgctt
aactacaacttccctccattctgtgtaggtgaaactggttttgttggttctcctaagcgt
cgtgaaatcggccatggtaaccttgctaagcgtggtatttcagctgtaatgcctacactt
actgagttcccttactcaatccgtgtagtatctgaaattactgaatcaaacggttcttct
tcaatggcgtctgtttgtggtacttcactagcacttatgaacgcgggtgtaccaattaaa
gcatctgttgccggtattgcgatgggtctagttaaagaagacgaaaaattcgttgttctt
tctgacattttaggtgatgaagatcacttaggtgacatggactttaaagttgccggtact
gctgcgggtattactgcacttcaaatggatatcaaaatcgaaggtatcactcaagaaatc
atgcaaattgcgcttaaacaagcaaaagctgcacgtttacatatcttagaagtgatggat
gaagcgatttcggctccttctgaagagctatcaatgtttgctcctcgcatatacacaatg
aaaatcccacagaagaaaatcgctgaagttattggtaaaggtggcgcaactattcgtcag
cttactgaagaaactggcacaacgattgaaatcggtgacgacggtacaattaaaattgcc
gctacagatggcgaaagtgcagctaatgcgattagccgtattgagcaattaacagctgaa
cttgaagtaggtactatctacgaaggtaaagttgtacgtatcgtagacttcggtgcgttt
gtaaacattcttcctggtaaagatggtctagtacatatttctcaaattagtactgagcgc
gttaataacgtggctgatcacctttctgaaggtcaagaagttaaagttaaagtactagaa
gtagatcgccaaggccgtgtacgtctaagtattaaagaagcaatggaatcagcagcacct
gcagctgacgcgccaactgacgcgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system