KEGG   Pseudomonas chlororaphis subsp. aurantiaca: JM49_03410
Entry
JM49_03410        CDS       T03338                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pcp  Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pcp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    JM49_03410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pcp03021]
    JM49_03410
   03400 DNA repair and recombination proteins [BR:pcp03400]
    JM49_03410
Enzymes [BR:pcp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     JM49_03410
Transcription machinery [BR:pcp03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     JM49_03410
DNA repair and recombination proteins [BR:pcp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      JM49_03410
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: AIS10747
UniProt: A0A1E1G4G6
Position
749157..753356
AA seq 1399 aa
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRITETVNDRDGGSVTNTRIVDTTVGRALLFQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGDEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGDDGKDLLLPGTDVPAQYFLPANALVGVADGARIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLNTEDKFVAKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq 4200 nt   +upstreamnt  +downstreamnt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcat
cgtggcgtgatctgcgagaagtgcggcgttgaagttgcactggccaaggttcgccgtgag
cgcatggcgcacatcgaactggcttcgccagttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgtgttctctac
ttcgagagctatgtcgttatcgatccgggcatgaccactctggaaaaaggtcaactgctc
aacgacgagcagtacttcgaagcactggaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgttgcacgctatcgacctggaacacgagattggtcgt
ctgcgcgaagagattccgcaaaccaactcggaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtccactggtcccactggacggcggtcgtttt
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgcttgaag
cgcctgctggatctgtccgctccggacatcatcgtacgcaacgaaaagcgtatgttgcag
gaagccgtcgacgcactgctcgacaacggtcgtcgtggccgcgctattaccggttccaac
aagcgtcctctaaaatccttggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggccgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgcctaagaaaatggctctcgagctgtttaaaccgttc
attttcggcaagttggaaatgcgtggcctggccaccaccatcaaagccgcgaagaagatg
gtcgagcgcgagctgccagaggtttgggacgttctcgccgaagtgattcgcgaacaccca
gtgctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctattcagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggatctgcaggaagttgaccgtgtgttccgtgccggc
gaagccgcactgcacgccaaggtcaaggtgcggatcaccgaaaccgtcaacgatcgtgat
ggcggcagcgtgaccaacactcgtattgtcgacaccactgtcggccgtgcgctgttgttc
caggttgtgccaaaaggtctgtcgtacgacgtcgtcaacctgccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcctactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtgctgccaccgatgaa
gtgaaagagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctttggtcgaaagcgaacgacgaagtctccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgtcacggcgacgaagtcgagcaagaatccttcaac
tcgatgtacatgatggccgactcgggtgcgcggggttccgcagcacagattcgtcagctg
gccggtatgcgtggtctgatggccaagccggacggttccatcatcgaaacgccgattact
gcgaacttccgtgaaggtctgagcgtactccagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaactgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaggatctggttgtaaccgagatcgactgtggcaccgagcacggcctg
gtaatgactccgcacattgaaggcggcgacgttgtagagccgttgggtgagcgcgtgttg
ggtcgtgttattgcccgtgacgtattcaagccaggtaccgaggacgtcatcgttcctgcc
ggcactctggtcgacgagaagtgggttgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagttgcgaaacccgctacggcatttgcgccaagtgctacggc
cgcgacctggctcgtggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgct
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcggccgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cacaacctgaagcacgttgagcgagtggatggtcatctggttgctgtgtcccgttccggt
gagctggcgattgctgacgacttcggtcgtgagcgcgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagagggtgacaaggtcgacgctggctctattgtggccaagtgg
gatccgcacacccacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gttctcgatgccaaagaccgtccggctgcaggtaaggacatccgtcctgcagtgaagatg
gtgggtgacgatggcaaagatctgctgttgccaggtactgacgtaccggcccagtacttc
ctgccagccaacgccctggtcggtgttgcggacggtgcgcggatcgcgatcggtgacgtt
atcgcgcgtattccgcaagaaacttcgaagactcgtgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaggctcgtcgtccgaaagaggcctcgatcctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaaaggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggtgaacaggtaaaccgcggcgaagttatctccgacggtccaagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtgaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggttgagatcgctgaatccggcgattccagcttcatcaagggcgaccagatg
gaactgactcacgtactggtagagaacgagcgtctgaacaccgaagacaagtttgtcgcc
aagttcacccgcgttctgctgggtatcaccaaggcgtcgctgtcgaccgaatcgttcatc
tcggcggcctctttccaagagaccactcgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacttgcgcggcctgaaagaaaacgtggtcgtgggtcgcctgatcccggctggt
accggcctggcgtatcacagcgagcgtaagcgtcgtcgtgatgccgacaagcctctgcgc
gtaagcgcaagtgaagttgaagctgcactgaccgaagcgctgaactccagcggtaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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