KEGG   Pelecanus crispus (Dalmatian pelican): 104027387
Entry
104027387         CDS       T08340                                 
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1
  KO
K12828  splicing factor 3B subunit 1
Organism
pcri  Pelecanus crispus (Dalmatian pelican)
Pathway
pcri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104027387 (SF3B1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pcri03041]
    104027387 (SF3B1)
   03036 Chromosome and associated proteins [BR:pcri03036]
    104027387 (SF3B1)
Spliceosome [BR:pcri03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    104027387 (SF3B1)
 Complex B
    104027387 (SF3B1)
 Complex C
   U2 SnRNP specific factors
    104027387 (SF3B1)
Chromosome and associated proteins [BR:pcri03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    104027387 (SF3B1)
SSDB
Motif
Pfam: SF3b1 HEAT_EZ Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central TALPID3
Other DBs
NCBI-GeneID: 104027387
NCBI-ProteinID: XP_009476395
Position
Unknown
AA seq 1291 aa
IEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDY
PSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKKHRRMMIISPE
RLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAASQP
PSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSK
IWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAET
PRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPG
HIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTA
TPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQK
ERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLV
KVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTM
RPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAI
LMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWK
GIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVK
QCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRI
VDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNG
FGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGH
LGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQE
NCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV
LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSF
LFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLN
YVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIY
IGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq 3878 nt   +upstreamnt  +downstreamnt
atattgaagcacaaattcgagaaattcaaggaaaaaagcctgctcttgatgaagcacaag
gagtaggccttgattccacaggatattatgatcaagaaatttatggtggcagtgacagca
ggttcgctggatatgtcacttctattgcagcaactgaattggaagatgatgacgatgact
acccttccacaagtttgcttggccagaagaagccagggtaccatgctccagtggcattgc
ttaatgacataccacagtctactgaacagtatgatccttttgcagaacaccgtcctcaaa
agattgcggatcgggaagatgagtacaaaaagcacaggcggatgatgataatttcccctg
agcgtcttgatccttttgcagatggagggaagacaccagatcctaaaatgaatgccagaa
catacatggatgttatgcgtgaacagcatttaacaaaagaagagagggaaattaggcaac
agctagctgaaaaagctaaagctggagagcttaaagtcgtcaatggagctgcatctcagc
caccttcaaaacgcaaacggcgttgggatcagacagctgatcagactcctggtgctacac
ctaaaaaattatccagttgggatcaagcagagactccgggacatacaccatctctgcgat
gggatgaaactccaggccgcgcaaagggtagcgaaactcctggtgccacaccaggctcaa
aaatatgggatccaactcccagtcatacaccagcaggagctgcaacacctggacgggaca
cgcctggtcatgcaacaccaggccatggaggtgccacttccagtgcacgtaaaaatcgat
gggatgaaacacctaaaacagaaagagatactccgggacacggcagtggatgggctgaga
cgcctcgtacagacagaggtggtgactccattggtgagacaccaaccccaggagcaagta
aaagaaagtcacgatgggatgaaacacctgctagccagatgggtggcagcactcctgttc
tgacacctggcaaaacacccattggtacaccagctatgaacatggcaactcctacaccag
gtcatatcatgagcatgactcctgaacagctgcaggcttggcgttgggaaagggaaattg
atgagagaaacagaccactttctgatgaagaattggatgctatgtttccagaagggtata
aggttcttcccccaccagctggctatgtacctattcgcactccagctcgtaagcttacag
caactccaacacctttgggtggtatgactggattccacatgcagacagaagaccggacca
tgaagagtgttaacgaccagccatctggcaatcttccattcctcaaaccagatgatatcc
aatactttgataaactgctggttgatgttgatgaatcaaccctgagtcctgaagaacaga
aggagagaaaaataatgaaattgcttctgaaaataaagaatggcacacctcccatgagaa
aggctgcgttgcgacaaattactgataaagctcgggaatttggagcagggccgctgttta
atcagattctgcctctgctgatgtcaccaacacttgaagatcaggagcgtcacttgcttg
tcaaagtcattgacagaattctttacaaactggatgacttggtccgaccatatgtacaca
agatccttgttgtcattgaaccactgctgattgatgaagactactatgctagagtggaag
gcagagaaattatttcaaacttggctaaggctgctggtttggcaacaatgatctccacaa
tgcgacctgatattgataatatggatgaatatgtccgaaatacaacagctcgagcctttg
ctgttgttgcgtctgctttgggcattccttctctattacccttcttgaaagctgtctgta
aaagcaaaaaatcctggcaggctaggcatactggcatcaagattgtacagcagattgcta
ttcttatgggttgtgctatcttgcctcatctcaggagcttggttgaaattattgaacatg
gtctggtggatgaacagcagaaagttcgcaccatcagtgctttggctattgctgctttgg
ctgaggcagctactccctatggtattgagtcatttgattctgttttgaagcctttatgga
agggtatacgtcaacacagaggaaagggtttggctgcctttttgaaggctattggttacc
tgattccactcatggatgctgagtatgcgaactactataccagagaagtcatgctaatcc
ttatcagagagttccagtctcctgatgaagagatgaaaaaaattgtgttgaaggtggtaa
agcagtgttgtggtacagatggtgttgaagcaaactacattaaaacagaaatcttgccgc
cttttttcaaacacttctggcagcacagaatggcattggacagaagaaattaccgacagt
tggttgatacaactgtggagctggcaaataaagttggagcagcagaaattatttctagaa
ttgtggatgatctgaaagatgaggctgaacagtacagaaaaatggtcatggaaacaattg
agaagataatgggaaatctgggggcagcagacattgatcataaattagaagaacaactta
ttgatggtatcttgtacgcctttcaggaacagaccacagaggattctgtgatgctgaatg
gttttggcacagtggttaatgctctaggcaaaagagttaaaccctacttaccacagatct
gtggtacagttttgtggcgtttgaacaacaagtcagctaaagttaggcagcaggctgctg
acctgatctctcgtactgcagttgtcatgaagacttgtcaagaggaaaaactgatgggac
acttgggtgttgtgttgtatgagtacctgggtgaagaatatcctgaagtactgggcagca
tactcggagcacttaaggctattgttaacgttataggtatgcacaagatgacgccaccaa
tcaaagatctgctgccacggctcacacctattctgaagaacagacatgagaaagtacagg
aaaattgtattgatcttgttgggcgcattgcagaccgaggtgcagaatatgtttctgcaa
gagaatggatgaggatctgctttgaactgcttgaattattaaaagctcacaagaaagcta
tccgaagagccacagtgaacacttttggttatattgcgaaagctattggacctcacgatg
tattggctacactgctaaataacttgaaagtacaggaaaggcagaacagagtatgtacta
cagtagcaattgctattgtagccgaaacctgctcacctttcacagtgctgcctgcactca
tgaatgaatacagagttccagaactgaatgtccagaatggtgtgttaaaatctctttctt
tcctgtttgaatacattggagagatgggaaaagattacatttatgctgttacaccattgc
ttgaagatgctttaatggacagggatcttgtacacagacaaacagccagtgccgtggtgc
aacatatgtctcttggtgtttatgggtttggctgtgaagattctcttaatcatttgttaa
attacgtatggcctaatgtgtttgaaacctctcctcacgtcattcaggcagtcatggggg
ctctggagggcctcagagttgctattggtccctgcagaatgttgcagtattgtttacagg
gtttgtttcaccctgccaggaaagtcagagacgtttattggaagatttataactcaatct
acatcggatcacaggatgctctgatagcacattatccaagaatctataacgatgaaaaga
acacctatattcgttatgaacttgattacatcttataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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