KEGG   Plasmodium cynomolgi: PCYB_123780
Entry
PCYB_123780       CDS       T02490                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
pcy  Plasmodium cynomolgi
Pathway
pcy03018  RNA degradation
pcy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PCYB_123780
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PCYB_123780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcy03019]
    PCYB_123780
   03041 Spliceosome [BR:pcy03041]
    PCYB_123780
Messenger RNA biogenesis [BR:pcy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PCYB_123780
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PCYB_123780
Spliceosome [BR:pcy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PCYB_123780
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 14694185
NCBI-ProteinID: XP_004223759
UniProt: K6VEW5
Position
12:1209370..1209603
AA seq 77 aa
MSSNSPKDFVESLKGRVVIVRLNNGSDFKGILACLDERMNVALEQTEEFFEGEFIESYYD
AFIRGNNVFYIRAIDDE
NT seq 234 nt   +upstreamnt  +downstreamnt
atgagctccaactcgcctaaggactttgtggagagcctgaagggacgagtcgtcatagtg
cgactgaacaacgggtccgacttcaagggtattctggcctgcctggatgaacgaatgaac
gtcgcgctggagcaaaccgaggagttcttcgaaggagagttcattgagagctactacgat
gccttcattcgcggcaacaacgtgttttacatacgggccatcgacgatgagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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