KEGG   Phoenix dactylifera (date palm): 103701962
Entry
103701962         CDS       T03274                                 
Name
(RefSeq) ribosomal RNA small subunit methyltransferase nep-1
  KO
K14568  rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    103701962
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pda03009]
    103701962
Enzymes [BR:pda01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.260  rRNA small subunit pseudouridine methyltransferase Nep1
     103701962
Ribosome biogenesis [BR:pda03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    103701962
SSDB
Motif
Pfam: EMG1
Other DBs
NCBI-GeneID: 103701962
NCBI-ProteinID: XP_008782418
UniProt: A0A8B7BP64
Position
6:complement(1583944..1587956)
AA seq 287 aa
MVRPHAVKGRKHKKRRMEEAVEEEKDEVLEAEEEEGVKEEEVGNGGEAVAAEDEERAEEA
VEQMAGIPVMPPVEGAKKPGVIFVLERASLEVGKVGKTFHILNSDEHANYLKKQNRNPAD
YRPDIIHQALLAIFDSPVTKAGRLQAVYVKTEKGVLFEIKPYVRIPRTFKRFAGLMLQLL
QKLSIAAVGKREKLLNIIKNPVTRHLPANSRRIGLSYSSEKLVDLNNYVAAAANDDVSLV
FVVGATAHGVIDKEYADDFIAISEYPLSAACCLNRICGALEQKWRIR
NT seq 864 nt   +upstreamnt  +downstreamnt
atggttcgtcctcacgccgtgaaggggagaaagcacaagaagagaagaatggaagaagca
gtagaagaggagaaagatgaggtcttggaagcggaggaggaggagggtgtgaaggaagag
gaggtggggaatggaggagaggcagtggcggcggaggacgaggagagggccgaggaggct
gtggagcagatggcggggatccccgttatgcctcccgtcgagggggcgaagaagcccggc
gtcatcttcgtcctcgagagggcgtccctggaagtcggcaaagtcgggaagacattccac
attctaaactcagatgagcatgcgaactatctgaaaaaacagaaccgtaatcctgctgat
tataggccagatatcattcaccaggcacttcttgctatttttgatagccctgtcactaag
gctgggaggctgcaggctgtttacgtaaaaactgagaaaggagtgcttttcgaaattaaa
ccatatgtacgcatcccacgtacattcaagcggttcgctgggctcatgttgcaattactt
cagaagttgagtatagctgctgttggcaagcgcgagaaacttcttaacataataaaaaat
cctgttacacgccacttgcctgccaattcccggagaataggcctctcatatagttcagaa
aagttggttgatttgaacaattatgttgctgctgcggctaatgacgatgtcagccttgtt
tttgtggtcggtgctacggcacatggagtgatcgataaggaatatgcagatgattttata
gcaatttctgaatacccgctaagcgcagcatgctgtttaaaccggatatgtggtgcactt
gagcaaaagtggaggatcagatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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