KEGG   Phoenix dactylifera (date palm): 103715965
Entry
103715965         CDS       T03274                                 
Name
(RefSeq) general negative regulator of transcription subunit 4-like
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103715965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pda03000]
    103715965
   03019 Messenger RNA biogenesis [BR:pda03019]
    103715965
   04121 Ubiquitin system [BR:pda04121]
    103715965
Enzymes [BR:pda01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     103715965
Transcription factors [BR:pda03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    103715965
Messenger RNA biogenesis [BR:pda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103715965
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103715965
Ubiquitin system [BR:pda04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    103715965
SSDB
Motif
Pfam: zf-RING_4 RRM_1 Baculo_IE-1 zf-RING_2 zf-C3HC4_3 SET_assoc zf-RING_UBOX zf-C3HC4 zf-UDP
Other DBs
NCBI-GeneID: 103715965
NCBI-ProteinID: XP_038985112
UniProt: A0A8B9AH39
Position
8:19832514..19848235
AA seq 449 aa
MSNQGEIHCPLCMEEMDLTDQLLKPCKCGYEMCIWCWHHIIEMAEKDDTEGRCPACRSPY
DKERILGRKISSERLAELNSEKKQKLQKAKLKTSEVRSDLTTVRVIKRNLVYVAGLPAKI
ADEETLRKKEFLGQYGKITKIVIARDVGTNRLFPSFCTSVVYVTFSKEQEALRCIEVVNG
FILDGRPLKACFGTTRYCHAWLKNMPCRNPHCFFLHDAGPQEDICNKDEVASACLSKLPQ
NSGNALHNFERRSGSVLPPPRDHFCRSNSSVARDKFLIRSVVYTPTDNGKRHFQNGDSGK
SDVLPVAASWGSRLASGRSPYAGVAFSQGTIDHPIVPTSSLAGVDIQALPQNAYPTQRQM
IMLRNQMPLSNGHLKNIASSEPYVENGFREDTVMPNFKSSNYTNIMTNNTVSGSSFVTCR
EDMESRITQPSHSSDSVGFSQQPYASFFR
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgagcaaccaaggggaaatacactgtccactgtgcatggaggagatggatctgacagat
caacttttgaagccttgtaaatgcggatatgagatgtgcatctggtgttggcatcatata
atagaaatggccgagaaggatgatactgaaggacggtgtcctgcatgccgtagtccatat
gataaggagaggatacttgggaggaaaatcagcagtgagaggcttgcagaactaaattct
gagaagaagcagaaattacaaaaggctaaattaaaaacatcagaagtgcgaagtgatctc
actactgtccgtgtcattaagcggaatcttgtttatgttgctggtctacctgctaaaata
gctgatgaagagacccttaggaagaaggaatttttgggacagtatgggaaaattacaaag
attgttatagcccgggatgttggaaccaaccggctttttccatcattctgcacttctgtt
gtatatgttacgttttctaaggagcaggaggctcttcgttgcattgaggttgtaaatggt
ttcattttagatggtagacctttaaaagcatgctttggtaccacaagatactgccatgcg
tggttaaagaatatgccttgtcgcaacccacactgtttttttttgcatgatgctggtccc
caagaagatatctgcaacaaagatgaagttgcttcagcatgtctaagtaaacttccacaa
aattctggaaatgctttgcataattttgaacgacgttcaggaagtgtattacctcctcca
agggaccacttctgcaggagcaacagtagtgttgctagggacaaatttctcatccggtct
gttgtttatactcctaccgataatggcaaaagacattttcaaaatggtgatagtggaaaa
tctgatgtccttccagtagcggcttcatggggctcaagacttgcttctggtaggtcacca
tatgctggtgttgctttttcccaaggaacaattgatcatcctatcgttcccactagttct
cttgctggagttgacatacaagcattgccacagaatgcctatccaactcaaaggcaaatg
atcatgttaagaaatcaaatgcctctttcaaacgggcacctaaaaaatattgcatcatcg
gaaccatatgttgaaaatggttttagagaagatacggttatgccaaatttcaagtcaagc
aattatactaacataatgacaaataatactgtcagtggatcatcttttgttacatgtaga
gaagacatggaatcaagaatcacccaaccatcacactcctctgattcagttggatttagt
cagcaaccatatgcttcttttttcagatga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (9)   
   Pfam (9)   
All databases (44)   

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