HEADER RNA BINDING PROTEIN 04-JAN-07 2JNB
TITLE SOLUTION STRUCTURE OF RNA-BINDING PROTEIN 15.5K
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NHP2-LIKE PROTEIN 1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: HIGH MOBILITY GROUP-LIKE NUCLEAR PROTEIN 2 HOMOLOG 1,
COMPND 5 U4/U6.U5 TRI-SNRNP 15.5 KDA PROTEIN, OTK27, HSNU13;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: NHP2L1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR;
SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET 11A
KEYWDS SPLICING, KINK-TURN RNA-BINDING PROTEIN, NHPX, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.E.SOSS,P.F.FLYNN
REVDAT 5 20-DEC-23 2JNB 1 REMARK
REVDAT 4 09-MAR-22 2JNB 1 REMARK SEQADV
REVDAT 3 24-FEB-09 2JNB 1 VERSN
REVDAT 2 25-DEC-07 2JNB 1 JRNL
REVDAT 1 18-DEC-07 2JNB 0
JRNL AUTH S.E.SOSS,P.F.FLYNN
JRNL TITL FUNCTIONAL IMPLICATIONS FOR A PROTOTYPICAL K-TURN BINDING
JRNL TITL 2 PROTEIN FROM STRUCTURAL AND DYNAMICAL STUDIES OF 15.5K
JRNL REF BIOCHEMISTRY V. 46 14979 2007
JRNL REFN ISSN 0006-2960
JRNL PMID 18044964
JRNL DOI 10.1021/BI701254Q
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : FELIX 97.0, CYANA 2.1
REMARK 3 AUTHORS : ACCELRYS SOFTWARE INC. (FELIX), GUNTERT,
REMARK 3 MUMENTHALER AND WUTHRICH (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2JNB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-07.
REMARK 100 THE DEPOSITION ID IS D_1000100047.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293; 293
REMARK 210 PH : 6.0; 6.0
REMARK 210 IONIC STRENGTH : 250; 200
REMARK 210 PRESSURE : AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.1 % SODIUM AZIDE, 100 MM
REMARK 210 SODIUM CHLORIDE, 100 MM SODIUM
REMARK 210 PHOSPHATE, 1.6 MM PROTEIN, 90%
REMARK 210 H2O, 10% D2O; 0.1 % SODIUM AZIDE,
REMARK 210 200 MM SODIUM CHLORIDE, 50 MM
REMARK 210 SODIUM PHOSPHATE, 0.9 MM [U-98%
REMARK 210 13C, U-98% 15N] PROTEIN, 90% H2O,
REMARK 210 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH;
REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D
REMARK 210 HN(CO)CA; 2D 1H-13C HSQC; 3D
REMARK 210 C(CO)NH; 3D HBHA(CO)NH; 3D HCCH-
REMARK 210 TOCSY; 3D HCCH-COSY; 3D 1H-15N
REMARK 210 NOESY; 3D 1H-13C NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : SPARKY 3.111, TALOS, CYANA 2.1,
REMARK 210 PROCHECKNMR
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-20
REMARK 465 RES C SSSEQI
REMARK 465 MET A -15
REMARK 465 GLY A -14
REMARK 465 HIS A -13
REMARK 465 HIS A -12
REMARK 465 HIS A -11
REMARK 465 HIS A -10
REMARK 465 HIS A -9
REMARK 465 HIS A -8
REMARK 465 SER A -7
REMARK 465 SER A -6
REMARK 465 GLY A -5
REMARK 465 ILE A -4
REMARK 465 GLU A -3
REMARK 465 GLU A -2
REMARK 465 GLY A -1
REMARK 465 ARG A 0
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 THR A 2 113.63 -164.35
REMARK 500 1 GLU A 3 26.62 -152.16
REMARK 500 1 ASP A 15 175.93 -56.52
REMARK 500 1 LYS A 37 81.72 -150.58
REMARK 500 1 ILE A 50 20.09 -145.06
REMARK 500 1 LEU A 72 -74.55 -111.75
REMARK 500 1 CYS A 73 -171.93 -171.90
REMARK 500 1 ASN A 77 89.33 65.71
REMARK 500 1 VAL A 78 89.83 -150.36
REMARK 500 1 TYR A 80 139.33 -174.21
REMARK 500 1 SER A 85 117.50 -172.23
REMARK 500 2 GLU A 3 50.40 -165.70
REMARK 500 2 ASP A 5 56.30 -92.45
REMARK 500 2 PRO A 8 90.42 -69.72
REMARK 500 2 ALA A 10 33.11 -155.45
REMARK 500 2 ILE A 50 15.26 -143.64
REMARK 500 2 LEU A 72 -73.90 -111.48
REMARK 500 2 CYS A 73 -163.51 -171.11
REMARK 500 2 ASN A 77 87.50 64.39
REMARK 500 2 VAL A 81 135.17 -172.53
REMARK 500 2 SER A 85 141.35 -176.61
REMARK 500 3 GLU A 3 46.29 -171.64
REMARK 500 3 ASP A 5 59.44 -108.06
REMARK 500 3 ARG A 36 109.85 -160.89
REMARK 500 3 ILE A 50 19.50 -145.03
REMARK 500 3 LEU A 72 -74.59 -111.70
REMARK 500 3 CYS A 73 -169.32 -171.73
REMARK 500 3 ASN A 77 88.21 64.91
REMARK 500 3 VAL A 78 89.79 -150.13
REMARK 500 3 ARG A 84 57.32 -106.32
REMARK 500 3 SER A 85 106.08 65.21
REMARK 500 3 ALA A 101 116.89 -165.22
REMARK 500 4 THR A 2 118.16 -167.45
REMARK 500 4 GLU A 3 63.75 -160.88
REMARK 500 4 ASP A 5 67.72 -172.33
REMARK 500 4 PRO A 70 99.02 -69.72
REMARK 500 4 CYS A 73 -177.52 -57.27
REMARK 500 4 ASN A 77 78.26 63.89
REMARK 500 4 ARG A 84 55.34 -99.44
REMARK 500 4 SER A 85 114.77 -166.53
REMARK 500 5 THR A 2 126.81 -177.48
REMARK 500 5 ASP A 5 -76.21 -148.02
REMARK 500 5 PRO A 8 90.60 -69.79
REMARK 500 5 ILE A 50 18.25 -144.83
REMARK 500 5 PHE A 53 145.07 -174.41
REMARK 500 5 LEU A 72 -74.24 -111.56
REMARK 500 5 CYS A 73 -169.28 -171.53
REMARK 500 5 ASN A 77 88.28 64.95
REMARK 500 5 VAL A 78 89.90 -150.27
REMARK 500 5 TYR A 80 148.15 -174.08
REMARK 500
REMARK 500 THIS ENTRY HAS 197 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 650
REMARK 650 HELIX
REMARK 650 DETERMINATION METHOD: AUTHOR
REMARK 700
REMARK 700 SHEET
REMARK 700 DETERMINATION METHOD: AUTHOR
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 7249 RELATED DB: BMRB
REMARK 900 ENTRY CONTAINING CHEMICAL SHIFT ASSIGNMENTS FOR THE PROTEIN
DBREF 2JNB A 1 128 UNP P55769 NH2L1_HUMAN 1 128
SEQADV 2JNB MET A -15 UNP P55769 EXPRESSION TAG
SEQADV 2JNB GLY A -14 UNP P55769 EXPRESSION TAG
SEQADV 2JNB HIS A -13 UNP P55769 EXPRESSION TAG
SEQADV 2JNB HIS A -12 UNP P55769 EXPRESSION TAG
SEQADV 2JNB HIS A -11 UNP P55769 EXPRESSION TAG
SEQADV 2JNB HIS A -10 UNP P55769 EXPRESSION TAG
SEQADV 2JNB HIS A -9 UNP P55769 EXPRESSION TAG
SEQADV 2JNB HIS A -8 UNP P55769 EXPRESSION TAG
SEQADV 2JNB SER A -7 UNP P55769 EXPRESSION TAG
SEQADV 2JNB SER A -6 UNP P55769 EXPRESSION TAG
SEQADV 2JNB GLY A -5 UNP P55769 EXPRESSION TAG
SEQADV 2JNB ILE A -4 UNP P55769 EXPRESSION TAG
SEQADV 2JNB GLU A -3 UNP P55769 EXPRESSION TAG
SEQADV 2JNB GLU A -2 UNP P55769 EXPRESSION TAG
SEQADV 2JNB GLY A -1 UNP P55769 EXPRESSION TAG
SEQADV 2JNB ARG A 0 UNP P55769 EXPRESSION TAG
SEQRES 1 A 144 MET GLY HIS HIS HIS HIS HIS HIS SER SER GLY ILE GLU
SEQRES 2 A 144 GLU GLY ARG MET THR GLU ALA ASP VAL ASN PRO LYS ALA
SEQRES 3 A 144 TYR PRO LEU ALA ASP ALA HIS LEU THR LYS LYS LEU LEU
SEQRES 4 A 144 ASP LEU VAL GLN GLN SER CYS ASN TYR LYS GLN LEU ARG
SEQRES 5 A 144 LYS GLY ALA ASN GLU ALA THR LYS THR LEU ASN ARG GLY
SEQRES 6 A 144 ILE SER GLU PHE ILE VAL MET ALA ALA ASP ALA GLU PRO
SEQRES 7 A 144 LEU GLU ILE ILE LEU HIS LEU PRO LEU LEU CYS GLU ASP
SEQRES 8 A 144 LYS ASN VAL PRO TYR VAL PHE VAL ARG SER LYS GLN ALA
SEQRES 9 A 144 LEU GLY ARG ALA CYS GLY VAL SER ARG PRO VAL ILE ALA
SEQRES 10 A 144 CYS SER VAL THR ILE LYS GLU GLY SER GLN LEU LYS GLN
SEQRES 11 A 144 GLN ILE GLN SER ILE GLN GLN SER ILE GLU ARG LEU LEU
SEQRES 12 A 144 VAL
HELIX 1 1 ASP A 15 TYR A 32 1 18
HELIX 2 2 GLY A 38 ARG A 48 1 11
HELIX 3 3 LEU A 63 LEU A 69 1 7
HELIX 4 4 LYS A 86 GLY A 94 1 9
HELIX 5 5 LEU A 112 VAL A 128 1 17
SHEET 1 A 4 LEU A 35 LYS A 37 0
SHEET 2 A 4 TYR A 80 VAL A 83 0
SHEET 3 A 4 SER A 51 ALA A 57 1 N MET A 56 O VAL A 81
SHEET 4 A 4 ALA A 101 THR A 105 -1 O CYS A 102 N VAL A 55
CISPEP 1 TYR A 11 PRO A 12 1 0.00
CISPEP 2 GLU A 61 PRO A 62 1 0.03
CISPEP 3 TYR A 11 PRO A 12 2 -0.08
CISPEP 4 GLU A 61 PRO A 62 2 0.02
CISPEP 5 TYR A 11 PRO A 12 3 -0.04
CISPEP 6 GLU A 61 PRO A 62 3 -0.01
CISPEP 7 TYR A 11 PRO A 12 4 -0.06
CISPEP 8 GLU A 61 PRO A 62 4 0.10
CISPEP 9 TYR A 11 PRO A 12 5 -0.08
CISPEP 10 GLU A 61 PRO A 62 5 -0.02
CISPEP 11 TYR A 11 PRO A 12 6 -0.10
CISPEP 12 GLU A 61 PRO A 62 6 -0.03
CISPEP 13 TYR A 11 PRO A 12 7 -0.13
CISPEP 14 GLU A 61 PRO A 62 7 -0.04
CISPEP 15 TYR A 11 PRO A 12 8 -0.14
CISPEP 16 GLU A 61 PRO A 62 8 -0.04
CISPEP 17 TYR A 11 PRO A 12 9 -0.04
CISPEP 18 GLU A 61 PRO A 62 9 -0.09
CISPEP 19 TYR A 11 PRO A 12 10 -0.16
CISPEP 20 GLU A 61 PRO A 62 10 0.00
CISPEP 21 TYR A 11 PRO A 12 11 -0.04
CISPEP 22 GLU A 61 PRO A 62 11 0.19
CISPEP 23 TYR A 11 PRO A 12 12 0.01
CISPEP 24 GLU A 61 PRO A 62 12 -0.01
CISPEP 25 TYR A 11 PRO A 12 13 -0.01
CISPEP 26 GLU A 61 PRO A 62 13 -0.02
CISPEP 27 TYR A 11 PRO A 12 14 -0.02
CISPEP 28 GLU A 61 PRO A 62 14 -0.06
CISPEP 29 TYR A 11 PRO A 12 15 0.03
CISPEP 30 GLU A 61 PRO A 62 15 -0.02
CISPEP 31 TYR A 11 PRO A 12 16 -0.13
CISPEP 32 GLU A 61 PRO A 62 16 -0.05
CISPEP 33 TYR A 11 PRO A 12 17 -0.01
CISPEP 34 GLU A 61 PRO A 62 17 -0.06
CISPEP 35 TYR A 11 PRO A 12 18 0.03
CISPEP 36 GLU A 61 PRO A 62 18 -0.13
CISPEP 37 TYR A 11 PRO A 12 19 -0.07
CISPEP 38 GLU A 61 PRO A 62 19 -0.06
CISPEP 39 TYR A 11 PRO A 12 20 -0.06
CISPEP 40 GLU A 61 PRO A 62 20 0.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
(ATOM LINES ARE NOT SHOWN.)
END
