GenomeNet

Database: PDB
Entry: 3ISN
LinkDB: 3ISN
Original site: 3ISN 
HEADER    TRANSFERASE, HYDROLASE                  26-AUG-09   3ISN              
TITLE     CRYSTAL STRUCTURE OF HIV-1 RT BOUND TO A 6-VINYLPYRIMIDINE INHIBITOR  
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H;                      
COMPND   3 CHAIN: C;                                                            
COMPND   4 SYNONYM: HIV-1 REVERSE TRANSCRIPTASE, P66 RT;                        
COMPND   5 EC: 2.7.7.49, 2.7.7.7, 3.1.26.4;                                     
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: P51 RT;                                                    
COMPND   9 CHAIN: D;                                                            
COMPND  10 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS;                   
SOURCE   3 ORGANISM_COMMON: HIV-1;                                              
SOURCE   4 ORGANISM_TAXID: 11678;                                               
SOURCE   5 STRAIN: TYPE 1 BH10;                                                 
SOURCE   6 GENE: GAG-POL;                                                       
SOURCE   7 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   8 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 MOL_ID: 2;                                                           
SOURCE  11 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS;                   
SOURCE  12 ORGANISM_COMMON: HIV-1;                                              
SOURCE  13 ORGANISM_TAXID: 11678;                                               
SOURCE  14 STRAIN: TYPE 1 BH10;                                                 
SOURCE  15 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  16 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE  17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID                               
KEYWDS    HIV-1, INHIBITOR, RT, TRANSFERASE, HYDROLASE                          
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    E.ENNIFAR,S.FREISZ,G.BEC,P.DUMAS,M.BOTTA,M.RADI                       
REVDAT   2   01-NOV-23 3ISN    1       REMARK                                   
REVDAT   1   16-MAR-10 3ISN    0                                                
JRNL        AUTH   S.FREISZ,G.BEC,M.RADI,P.WOLFF,E.CRESPAN,L.ANGELI,P.DUMAS,    
JRNL        AUTH 2 G.MAGA,M.BOTTA,E.ENNIFAR                                     
JRNL        TITL   CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE BOUND TO A  
JRNL        TITL 2 NON-NUCLEOSIDE INHIBITOR WITH A NOVEL MECHANISM OF ACTION    
JRNL        REF    ANGEW.CHEM.INT.ED.ENGL.       V.  49  1805 2010              
JRNL        REFN                   ISSN 1433-7851                               
JRNL        PMID   20135654                                                     
JRNL        DOI    10.1002/ANIE.200905651                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.50 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: 1.4_57)                       
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 49.10                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 88.8                           
REMARK   3   NUMBER OF REFLECTIONS             : 43911                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.224                           
REMARK   3   R VALUE            (WORKING SET) : 0.221                           
REMARK   3   FREE R VALUE                     : 0.281                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.550                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1998                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 49.1117 -  6.0202    1.00     3479   165  0.1878 0.2397        
REMARK   3     2  6.0202 -  4.7797    1.00     3412   163  0.1852 0.2343        
REMARK   3     3  4.7797 -  4.1759    1.00     3380   161  0.1707 0.2126        
REMARK   3     4  4.1759 -  3.7942    0.81     2737   131  0.1912 0.2744        
REMARK   3     5  3.7942 -  3.5223    0.77     2600   123  0.2144 0.2685        
REMARK   3     6  3.5223 -  3.3147    0.70     2352   113  0.2455 0.2833        
REMARK   3     7  3.3147 -  3.1487    0.99     3323   159  0.2412 0.3254        
REMARK   3     8  3.1487 -  3.0117    1.00     3350   159  0.2349 0.3135        
REMARK   3     9  3.0117 -  2.8958    1.00     3348   159  0.2365 0.3036        
REMARK   3    10  2.8958 -  2.7959    1.00     3381   162  0.2618 0.4177        
REMARK   3    11  2.7959 -  2.7084    1.00     3359   160  0.2926 0.3767        
REMARK   3    12  2.7084 -  2.6310    0.20      668    32  0.3237 0.2880        
REMARK   3    13  2.6310 -  2.5618    1.00     3319   158  0.3091 0.3828        
REMARK   3    14  2.5618 -  2.4993    0.95     3205   153  0.4562 0.4468        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : 0.32                                          
REMARK   3   B_SOL              : 50.00                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.410            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.050           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 52.08                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 63.51                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -6.29200                                             
REMARK   3    B22 (A**2) : 8.35000                                              
REMARK   3    B33 (A**2) : 1.62700                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 6.84000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.010           8173                                  
REMARK   3   ANGLE     :  1.353          11109                                  
REMARK   3   CHIRALITY :  0.085           1205                                  
REMARK   3   PLANARITY :  0.007           1399                                  
REMARK   3   DIHEDRAL  : 19.756           3072                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3ISN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-AUG-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000054815.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 20-DEC-08                          
REMARK 200  TEMPERATURE           (KELVIN) : 90                                 
REMARK 200  PH                             : 6.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SLS                                
REMARK 200  BEAMLINE                       : X06DA                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.2824                             
REMARK 200  MONOCHROMATOR                  : CRYSTAL                            
REMARK 200  OPTICS                         : CRYSTAL                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 225 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : XSCALE                             
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 49675                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.500                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 82.3                               
REMARK 200  DATA REDUNDANCY                : 8.100                              
REMARK 200  R MERGE                    (I) : 0.07600                            
REMARK 200  R SYM                      (I) : 0.06200                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 26.4900                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.56                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 67.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.54200                            
REMARK 200  R SYM FOR SHELL            (I) : 0.73700                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.530                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: PDB ID 1DLO                                          
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 60.82                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS , 25% PEG 3350, 200MM     
REMARK 280  AMMONIUM SULFATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP,            
REMARK 280  TEMPERATURE 277K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1                          
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y,-Z                                                 
REMARK 290       3555   X+1/2,Y+1/2,Z                                           
REMARK 290       4555   -X+1/2,Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   3  1.000000  0.000000  0.000000      112.56050            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       36.09100            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000      112.56050            
REMARK 290   SMTRY2   4  0.000000  1.000000  0.000000       36.09100            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 5230 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 45430 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH C 586  LIES ON A SPECIAL POSITION.                          
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ARG C   557                                                      
REMARK 465     LYS C   558                                                      
REMARK 465     ILE C   559                                                      
REMARK 465     LEU C   560                                                      
REMARK 465     LYS D   219                                                      
REMARK 465     LYS D   220                                                      
REMARK 465     HIS D   221                                                      
REMARK 465     GLN D   222                                                      
REMARK 465     LYS D   223                                                      
REMARK 465     GLU D   224                                                      
REMARK 465     PRO D   225                                                      
REMARK 465     PRO D   226                                                      
REMARK 465     PHE D   227                                                      
REMARK 465     LEU D   228                                                      
REMARK 465     TRP D   229                                                      
REMARK 465     MET D   230                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    PRO C  52   C   -  N   -  CA  ANGL. DEV. =  10.7 DEGREES          
REMARK 500    PRO D 420   C   -  N   -  CA  ANGL. DEV. =  11.7 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    LYS C  20       55.71   -148.81                                   
REMARK 500    PRO C  25     -159.03    -83.28                                   
REMARK 500    LEU C  26     -165.57    150.94                                   
REMARK 500    THR C  27      133.17    -28.97                                   
REMARK 500    ALA C  33      -61.13     71.59                                   
REMARK 500    PRO C  52       -7.25    -40.31                                   
REMARK 500    LYS C  66     -118.78     51.55                                   
REMARK 500    LYS C  70     -113.09     12.22                                   
REMARK 500    TRP C  71      -81.71   -125.64                                   
REMARK 500    ARG C  72      122.72     85.15                                   
REMARK 500    GLN C  91      127.94    -37.82                                   
REMARK 500    SER C 117       21.72    178.93                                   
REMARK 500    ASP C 121      107.73    -54.85                                   
REMARK 500    ILE C 135      -76.28    -24.07                                   
REMARK 500    ASN C 137       67.65   -104.74                                   
REMARK 500    MET C 184     -123.44     42.65                                   
REMARK 500    THR C 216       86.89   -173.26                                   
REMARK 500    ASP C 218      100.02    -55.53                                   
REMARK 500    LYS C 220      -91.60      4.93                                   
REMARK 500    HIS C 221     -120.48     61.24                                   
REMARK 500    GLN C 222       38.24   -149.93                                   
REMARK 500    PHE C 227       97.74     96.46                                   
REMARK 500    LYS C 249     -172.51   -175.92                                   
REMARK 500    ALA C 267      -47.85    133.17                                   
REMARK 500    LEU C 283      -74.60    -89.50                                   
REMARK 500    THR C 286     -158.47   -115.00                                   
REMARK 500    LYS C 287     -157.24   -161.61                                   
REMARK 500    ALA C 288       89.30     44.90                                   
REMARK 500    THR C 296      170.96    -58.20                                   
REMARK 500    GLN C 334       91.51     60.09                                   
REMARK 500    PHE C 346       -6.84     81.34                                   
REMARK 500    ARG C 358      -97.36    -57.64                                   
REMARK 500    GLU C 413      115.35    -39.92                                   
REMARK 500    ASN C 418       87.41    -65.74                                   
REMARK 500    THR C 419      -99.53   -123.41                                   
REMARK 500    PRO C 420     -120.14    -80.84                                   
REMARK 500    LYS C 451      -11.54     82.09                                   
REMARK 500    ASN C 471       59.24     34.34                                   
REMARK 500    THR C 472     -168.19   -127.03                                   
REMARK 500    ILE C 542       85.97     32.97                                   
REMARK 500    SER C 553       54.60   -112.97                                   
REMARK 500    PRO D   4        4.47    -58.06                                   
REMARK 500    LYS D  65     -120.90    -77.60                                   
REMARK 500    THR D  69     -103.42    -61.93                                   
REMARK 500    GLN D  85      152.12    -44.46                                   
REMARK 500    TRP D  88     -122.02     50.42                                   
REMARK 500    VAL D  90       45.00    -87.11                                   
REMARK 500    PRO D  95      160.68    -39.75                                   
REMARK 500    PHE D 116        9.85    -67.29                                   
REMARK 500    ASP D 121      128.67    -32.15                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      73 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDM C 561                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3ITH   RELATED DB: PDB                                   
REMARK 999                                                                      
REMARK 999 SEQUENCE                                                             
REMARK 999 E465Q IS MUTAGENESIS ACCORDING TO REFERENCE 9 OF DATABASE UNIPROTKB/ 
REMARK 999 SWISS-PROT P03366 (POL_HV1B1).                                       
DBREF  3ISN C    1   560  UNP    P03366   POL_HV1B1      600   1159             
DBREF  3ISN D    1   427  UNP    P03366   POL_HV1B1      600   1026             
SEQADV 3ISN GLN C  478  UNP  P03366    GLU  1077 SEE REMARK 999                 
SEQRES   1 C  560  PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS          
SEQRES   2 C  560  PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU          
SEQRES   3 C  560  THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR          
SEQRES   4 C  560  GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO          
SEQRES   5 C  560  GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS          
SEQRES   6 C  560  LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG          
SEQRES   7 C  560  GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN          
SEQRES   8 C  560  LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS          
SEQRES   9 C  560  SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER          
SEQRES  10 C  560  VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE          
SEQRES  11 C  560  THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG          
SEQRES  12 C  560  TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER          
SEQRES  13 C  560  PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU          
SEQRES  14 C  560  PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN          
SEQRES  15 C  560  TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE          
SEQRES  16 C  560  GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS          
SEQRES  17 C  560  LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS          
SEQRES  18 C  560  GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU          
SEQRES  19 C  560  HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO          
SEQRES  20 C  560  GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU          
SEQRES  21 C  560  VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY          
SEQRES  22 C  560  ILE LYS VAL ARG GLN LEU CYS LYS LEU LEU ARG GLY THR          
SEQRES  23 C  560  LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA          
SEQRES  24 C  560  GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU          
SEQRES  25 C  560  PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU          
SEQRES  26 C  560  ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR          
SEQRES  27 C  560  TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR          
SEQRES  28 C  560  GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP          
SEQRES  29 C  560  VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR          
SEQRES  30 C  560  GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS          
SEQRES  31 C  560  LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR          
SEQRES  32 C  560  GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE          
SEQRES  33 C  560  VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU          
SEQRES  34 C  560  GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR VAL          
SEQRES  35 C  560  ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS ALA          
SEQRES  36 C  560  GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL VAL PRO          
SEQRES  37 C  560  LEU THR ASN THR THR ASN GLN LYS THR GLN LEU GLN ALA          
SEQRES  38 C  560  ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL ASN          
SEQRES  39 C  560  ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE GLN          
SEQRES  40 C  560  ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL ASN GLN          
SEQRES  41 C  560  ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR LEU          
SEQRES  42 C  560  ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN GLU          
SEQRES  43 C  560  GLN VAL ASP LYS LEU VAL SER ALA GLY ILE ARG LYS ILE          
SEQRES  44 C  560  LEU                                                          
SEQRES   1 D  427  PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS          
SEQRES   2 D  427  PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU          
SEQRES   3 D  427  THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR          
SEQRES   4 D  427  GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO          
SEQRES   5 D  427  GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS          
SEQRES   6 D  427  LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG          
SEQRES   7 D  427  GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN          
SEQRES   8 D  427  LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS          
SEQRES   9 D  427  SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER          
SEQRES  10 D  427  VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE          
SEQRES  11 D  427  THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG          
SEQRES  12 D  427  TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER          
SEQRES  13 D  427  PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU          
SEQRES  14 D  427  PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN          
SEQRES  15 D  427  TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE          
SEQRES  16 D  427  GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS          
SEQRES  17 D  427  LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS          
SEQRES  18 D  427  GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU          
SEQRES  19 D  427  HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO          
SEQRES  20 D  427  GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU          
SEQRES  21 D  427  VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY          
SEQRES  22 D  427  ILE LYS VAL ARG GLN LEU CYS LYS LEU LEU ARG GLY THR          
SEQRES  23 D  427  LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA          
SEQRES  24 D  427  GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU          
SEQRES  25 D  427  PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU          
SEQRES  26 D  427  ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR          
SEQRES  27 D  427  TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR          
SEQRES  28 D  427  GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP          
SEQRES  29 D  427  VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR          
SEQRES  30 D  427  GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS          
SEQRES  31 D  427  LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR          
SEQRES  32 D  427  GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE          
SEQRES  33 D  427  VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR                  
HET    EDM  C 561      15                                                       
HETNAM     EDM 6-ETHENYL-N,N-DIMETHYL-2-(METHYLSULFONYL)PYRIMIDIN-4-            
HETNAM   2 EDM  AMINE                                                           
FORMUL   3  EDM    C9 H13 N3 O2 S                                               
FORMUL   4  HOH   *204(H2 O)                                                    
HELIX    1   1 THR C   27  GLU C   44  1                                  18    
HELIX    2   2 PHE C   77  THR C   84  1                                   8    
HELIX    3   3 HIS C   96  LEU C  100  5                                   5    
HELIX    4   4 ASP C  121  ALA C  129  5                                   9    
HELIX    5   5 GLY C  155  GLN C  174  1                                  20    
HELIX    6   6 GLU C  194  TRP C  212  1                                  19    
HELIX    7   7 THR C  253  GLN C  269  1                                  17    
HELIX    8   8 VAL C  276  LEU C  282  1                                   7    
HELIX    9   9 THR C  296  LEU C  310  1                                  15    
HELIX   10  10 ASN C  363  GLY C  384  1                                  22    
HELIX   11  11 GLN C  394  TYR C  405  1                                  12    
HELIX   12  12 THR C  473  ASP C  488  1                                  16    
HELIX   13  13 SER C  499  ALA C  508  1                                  10    
HELIX   14  14 SER C  515  LYS C  528  1                                  14    
HELIX   15  15 ILE C  542  SER C  553  1                                  12    
HELIX   16  16 THR D   27  GLU D   44  1                                  18    
HELIX   17  17 LYS D   66  THR D   69  5                                   4    
HELIX   18  18 PHE D   77  THR D   84  1                                   8    
HELIX   19  19 PHE D   87  GLN D   91  5                                   5    
HELIX   20  20 GLY D   99  LYS D  103  5                                   5    
HELIX   21  21 GLY D  112  VAL D  118  5                                   7    
HELIX   22  22 ASP D  121  ALA D  129  5                                   9    
HELIX   23  23 SER D  134  GLU D  138  5                                   5    
HELIX   24  24 LYS D  154  PHE D  160  1                                   7    
HELIX   25  25 PHE D  160  GLN D  174  1                                  15    
HELIX   26  26 GLU D  194  ARG D  211  1                                  18    
HELIX   27  27 VAL D  254  ALA D  267  1                                  14    
HELIX   28  28 VAL D  276  ARG D  284  1                                   9    
HELIX   29  29 THR D  296  LEU D  310  1                                  15    
HELIX   30  30 ASN D  363  GLY D  384  1                                  22    
HELIX   31  31 GLN D  394  TRP D  402  1                                   9    
HELIX   32  32 THR D  403  TYR D  405  5                                   3    
SHEET    1   A 3 ILE C  47  LYS C  49  0                                        
SHEET    2   A 3 ILE C 142  TYR C 146 -1  O  GLN C 145   N  SER C  48           
SHEET    3   A 3 PHE C 130  ILE C 132 -1  N  ILE C 132   O  ILE C 142           
SHEET    1   B 2 VAL C  60  ALA C  62  0                                        
SHEET    2   B 2 LYS C  73  VAL C  75 -1  O  LEU C  74   N  PHE C  61           
SHEET    1   C 3 SER C 105  ASP C 110  0                                        
SHEET    2   C 3 ASP C 186  SER C 191 -1  O  VAL C 189   N  THR C 107           
SHEET    3   C 3 VAL C 179  TYR C 183 -1  N  TYR C 183   O  ASP C 186           
SHEET    1   D 4 LEU C 228  TRP C 229  0                                        
SHEET    2   D 4 TYR C 232  LEU C 234 -1  O  TYR C 232   N  TRP C 229           
SHEET    3   D 4 TRP C 239  VAL C 241 -1  O  THR C 240   N  GLU C 233           
SHEET    4   D 4 VAL C 314  GLY C 316 -1  O  VAL C 314   N  VAL C 241           
SHEET    1   E 5 ASN C 348  ALA C 355  0                                        
SHEET    2   E 5 GLN C 336  TYR C 342 -1  N  ILE C 341   O  LYS C 350           
SHEET    3   E 5 ILE C 326  LYS C 331 -1  N  ILE C 326   O  TYR C 342           
SHEET    4   E 5 LYS C 388  LEU C 391  1  O  LYS C 390   N  ALA C 327           
SHEET    5   E 5 TRP C 414  PHE C 416  1  O  GLU C 415   N  LEU C 391           
SHEET    1   F 2 HIS C 361  THR C 362  0                                        
SHEET    2   F 2 LYS C 512  SER C 513 -1  O  LYS C 512   N  THR C 362           
SHEET    1   G 5 GLN C 464  LEU C 469  0                                        
SHEET    2   G 5 GLY C 453  THR C 459 -1  N  GLY C 453   O  LEU C 469           
SHEET    3   G 5 GLU C 438  ALA C 446 -1  N  TYR C 441   O  VAL C 458           
SHEET    4   G 5 GLU C 492  THR C 497  1  O  ASN C 494   N  GLU C 438           
SHEET    5   G 5 LYS C 530  TRP C 535  1  O  TYR C 532   N  ILE C 495           
SHEET    1   H 3 ILE D  47  LYS D  49  0                                        
SHEET    2   H 3 ILE D 142  TYR D 146 -1  O  GLN D 145   N  SER D  48           
SHEET    3   H 3 PHE D 130  ILE D 132 -1  N  ILE D 132   O  ILE D 142           
SHEET    1   I 2 VAL D  60  LYS D  64  0                                        
SHEET    2   I 2 TRP D  71  VAL D  75 -1  O  ARG D  72   N  ILE D  63           
SHEET    1   J 3 SER D 105  ASP D 110  0                                        
SHEET    2   J 3 ASP D 186  SER D 191 -1  O  VAL D 189   N  THR D 107           
SHEET    3   J 3 ILE D 178  TYR D 183 -1  N  TYR D 181   O  TYR D 188           
SHEET    1   K 2 TRP D 252  THR D 253  0                                        
SHEET    2   K 2 VAL D 292  ILE D 293 -1  O  ILE D 293   N  TRP D 252           
SHEET    1   L 5 LYS D 347  ALA D 355  0                                        
SHEET    2   L 5 GLN D 336  GLU D 344 -1  N  ILE D 341   O  LYS D 350           
SHEET    3   L 5 ILE D 326  LYS D 331 -1  N  GLN D 330   O  THR D 338           
SHEET    4   L 5 LYS D 388  LEU D 391  1  O  LYS D 390   N  ALA D 327           
SHEET    5   L 5 TRP D 414  PHE D 416  1  O  GLU D 415   N  PHE D 389           
SITE     1 AC1  9 MET C 184  ASP C 186  MET C 230  GLY C 231                    
SITE     2 AC1  9 LYS C 263  TRP C 266  HOH C 578  HOH C 631                    
SITE     3 AC1  9 HOH C 672                                                     
CRYST1  225.121   72.182   93.516  90.00 108.97  90.00 C 1 2 1       4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.004442  0.000000  0.001527        0.00000                         
SCALE2      0.000000  0.013854  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.011308        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
DBGET integrated database retrieval system