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Database: PDB
Entry: 3VTF
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Original site: 3VTF 
HEADER    OXIDOREDUCTASE                          29-MAY-12   3VTF              
TITLE     STRUCTURE OF A UDP-GLUCOSE DEHYDROGENASE FROM THE HYPERTHERMOPHILIC   
TITLE    2 ARCHAEON PYROBACULUM ISLANDICUM                                      
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: UDP-GLUCOSE 6-DEHYDROGENASE;                               
COMPND   3 CHAIN: A;                                                            
COMPND   4 EC: 1.1.1.22;                                                        
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: PYROBACULUM ISLANDICUM;                         
SOURCE   3 ORGANISM_TAXID: 384616;                                              
SOURCE   4 STRAIN: DSM 4184;                                                    
SOURCE   5 GENE: PISL_1505;                                                     
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET15                                     
KEYWDS    TWO DISCRETE ALPHA/BETA DOMAINS, DEHYDROGENASE, OXIDOREDUCTASE        
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    H.SAKURABA,T.OHSHIMA,K.YONEDA                                         
REVDAT   3   08-NOV-23 3VTF    1       REMARK SEQADV                            
REVDAT   2   22-NOV-17 3VTF    1       REMARK                                   
REVDAT   1   19-SEP-12 3VTF    0                                                
JRNL        AUTH   H.SAKURABA,T.KAWAI,K.YONEDA,T.OHSHIMA                        
JRNL        TITL   STRUCTURE OF A UDP-GLUCOSE DEHYDROGENASE FROM THE            
JRNL        TITL 2 HYPERTHERMOPHILIC ARCHAEON PYROBACULUM ISLANDICUM.           
JRNL        REF    ACTA CRYSTALLOGR.,SECT.F      V.  68  1003 2012              
JRNL        REFN                   ESSN 1744-3091                               
JRNL        PMID   22949183                                                     
JRNL        DOI    10.1107/S1744309112030667                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.00 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.6.0117                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 50.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 98.9                           
REMARK   3   NUMBER OF REFLECTIONS             : 36570                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.179                           
REMARK   3   R VALUE            (WORKING SET) : 0.177                           
REMARK   3   FREE R VALUE                     : 0.217                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1826                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.00                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.05                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 2438                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 96.55                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2060                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 136                          
REMARK   3   BIN FREE R VALUE                    : 0.2620                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3287                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 40                                      
REMARK   3   SOLVENT ATOMS            : 185                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 29.77                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 1.96000                                              
REMARK   3    B22 (A**2) : -0.39000                                             
REMARK   3    B33 (A**2) : -0.26000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 1.12000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.149         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.141         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.085         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.947         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.957                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.936                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  3393 ; 0.023 ; 0.019       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  4597 ; 2.057 ; 1.988       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   431 ; 5.527 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   143 ;33.169 ;21.888       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   545 ;14.616 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    36 ;19.836 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   513 ; 0.165 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  2570 ; 0.012 ; 0.021       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN    
REMARK   3  THE INPUT U VALUES: REFINED INDIVIDUALLY                            
REMARK   4                                                                      
REMARK   4 3VTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-12.                  
REMARK 100 THE DEPOSITION ID IS D_1000095478.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 02-MAR-12                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : PHOTON FACTORY                     
REMARK 200  BEAMLINE                       : BL-5A                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1                                  
REMARK 200  MONOCHROMATOR                  : SI                                 
REMARK 200  OPTICS                         : RHODIUM COATED SILICON SINGLE      
REMARK 200                                   CRYSTAL                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000                    
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK, HKL-2000                
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 36575                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.000                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.03                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: 3GG2                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 57.35                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, HEPES, PH 7.5, SITTING DROP,       
REMARK 280  TEMPERATURE 293K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1                          
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y,-Z                                                 
REMARK 290       3555   X+1/2,Y+1/2,Z                                           
REMARK 290       4555   -X+1/2,Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   3  1.000000  0.000000  0.000000       58.82600            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       38.36950            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000       58.82600            
REMARK 290   SMTRY2   4  0.000000  1.000000  0.000000       38.36950            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 8140 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 31850 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A1102  LIES ON A SPECIAL POSITION.                          
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A   -19                                                      
REMARK 465     GLY A   -18                                                      
REMARK 465     SER A   -17                                                      
REMARK 465     SER A   -16                                                      
REMARK 465     HIS A   -15                                                      
REMARK 465     HIS A   -14                                                      
REMARK 465     HIS A   -13                                                      
REMARK 465     HIS A   -12                                                      
REMARK 465     HIS A   -11                                                      
REMARK 465     HIS A   -10                                                      
REMARK 465     SER A    -9                                                      
REMARK 465     SER A    -8                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TYR A 408       76.34     63.22                                   
REMARK 500    ALA A 422       35.59   -146.24                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A 1001                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1002                
DBREF  3VTF A    1   424  UNP    A1RUM9   A1RUM9_PYRIL     1    424             
SEQADV 3VTF MET A  -19  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF GLY A  -18  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF SER A  -17  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF SER A  -16  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF HIS A  -15  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF HIS A  -14  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF HIS A  -13  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF HIS A  -12  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF HIS A  -11  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF HIS A  -10  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF SER A   -9  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF SER A   -8  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF GLY A   -7  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF LEU A   -6  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF VAL A   -5  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF PRO A   -4  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF ARG A   -3  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF GLY A   -2  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF SER A   -1  UNP  A1RUM9              EXPRESSION TAG                 
SEQADV 3VTF HIS A    0  UNP  A1RUM9              EXPRESSION TAG                 
SEQRES   1 A  444  MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY          
SEQRES   2 A  444  LEU VAL PRO ARG GLY SER HIS MET ALA SER LEU SER VAL          
SEQRES   3 A  444  LEU GLY LEU GLY TYR VAL GLY VAL VAL HIS ALA VAL GLY          
SEQRES   4 A  444  PHE ALA LEU LEU GLY HIS ARG VAL VAL GLY TYR ASP VAL          
SEQRES   5 A  444  ASN PRO SER ILE VAL GLU ARG LEU ARG ALA GLY ARG PRO          
SEQRES   6 A  444  HIS ILE TYR GLU PRO GLY LEU GLU GLU ALA LEU GLY ARG          
SEQRES   7 A  444  ALA LEU SER SER GLY ARG LEU SER PHE ALA GLU SER ALA          
SEQRES   8 A  444  GLU GLU ALA VAL ALA ALA THR ASP ALA THR PHE ILE ALA          
SEQRES   9 A  444  VAL GLY THR PRO PRO ALA PRO ASP GLY SER ALA ASP LEU          
SEQRES  10 A  444  ARG TYR VAL GLU ALA ALA ALA ARG ALA VAL GLY ARG GLY          
SEQRES  11 A  444  ILE ARG ALA LYS GLY ARG TRP HIS LEU VAL VAL VAL LYS          
SEQRES  12 A  444  SER THR VAL PRO PRO GLY THR THR GLU GLY LEU VAL ALA          
SEQRES  13 A  444  ARG ALA VAL ALA GLU GLU ALA GLY GLY VAL LYS PHE SER          
SEQRES  14 A  444  VAL ALA SER ASN PRO GLU PHE LEU ARG GLU GLY SER ALA          
SEQRES  15 A  444  LEU GLU ASP PHE PHE LYS PRO ASP ARG ILE VAL ILE GLY          
SEQRES  16 A  444  ALA GLY ASP GLU ARG ALA ALA SER PHE LEU LEU ASP VAL          
SEQRES  17 A  444  TYR LYS ALA VAL ASP ALA PRO LYS LEU VAL MET LYS PRO          
SEQRES  18 A  444  ARG GLU ALA GLU LEU VAL LYS TYR ALA SER ASN VAL PHE          
SEQRES  19 A  444  LEU ALA LEU LYS ILE SER PHE ALA ASN GLU VAL GLY LEU          
SEQRES  20 A  444  LEU ALA LYS ARG LEU GLY VAL ASP THR TYR ARG VAL PHE          
SEQRES  21 A  444  GLU ALA VAL GLY LEU ASP LYS ARG ILE GLY ARG HIS TYR          
SEQRES  22 A  444  PHE GLY ALA GLY LEU GLY PHE GLY GLY SER CYS PHE PRO          
SEQRES  23 A  444  LYS ASP THR LEU ALA PHE ILE ARG PHE GLY GLU SER LEU          
SEQRES  24 A  444  GLY LEU GLU MET ALA ILE SER LYS ALA VAL LEU ARG VAL          
SEQRES  25 A  444  ASN GLU TYR MET PRO ARG TYR ALA VAL GLN LEU LEU GLU          
SEQRES  26 A  444  GLU ARG LEU GLY GLY LEU ARG GLY ARG HIS VAL GLY VAL          
SEQRES  27 A  444  LEU GLY LEU ALA PHE LYS PRO ASN THR ASP ASP VAL ARG          
SEQRES  28 A  444  GLU SER ARG GLY VAL GLU VAL ALA ARG LEU LEU LEU GLU          
SEQRES  29 A  444  ARG GLY ALA ARG VAL TYR VAL HIS ASP PRO MET ALA MET          
SEQRES  30 A  444  GLU LYS ALA ARG ALA VAL LEU GLY ASP SER VAL THR TYR          
SEQRES  31 A  444  VAL GLU ASP PRO GLN ALA LEU LEU ASP GLN VAL GLU GLY          
SEQRES  32 A  444  VAL ILE ILE ALA THR ALA TRP PRO GLN TYR GLU GLY LEU          
SEQRES  33 A  444  ASP TYR ARG GLY LYS VAL VAL VAL ASP GLY ARG TYR VAL          
SEQRES  34 A  444  LYS LYS ALA ARG GLU ALA LYS ILE TYR GLU GLY VAL ALA          
SEQRES  35 A  444  TRP ALA                                                      
HET    UPG  A1001      36                                                       
HET    EDO  A1002       4                                                       
HETNAM     UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE                                   
HETNAM     EDO 1,2-ETHANEDIOL                                                   
HETSYN     UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE            
HETSYN   2 UPG  ESTER                                                           
HETSYN     EDO ETHYLENE GLYCOL                                                  
FORMUL   2  UPG    C15 H24 N2 O17 P2                                            
FORMUL   3  EDO    C2 H6 O2                                                     
FORMUL   4  HOH   *185(H2 O)                                                    
HELIX    1   1 GLY A   10  GLY A   24  1                                  15    
HELIX    2   2 ASN A   33  ALA A   42  1                                  10    
HELIX    3   3 GLY A   51  SER A   62  1                                  12    
HELIX    4   4 SER A   70  ALA A   77  1                                   8    
HELIX    5   5 LEU A   97  GLY A  115  1                                  19    
HELIX    6   6 GLY A  133  GLU A  141  1                                   9    
HELIX    7   7 SER A  161  LYS A  168  1                                   8    
HELIX    8   8 ASP A  178  TYR A  189  1                                  12    
HELIX    9   9 LYS A  200  LEU A  232  1                                  33    
HELIX   10  10 ASP A  235  LEU A  245  1                                  11    
HELIX   11  11 CYS A  264  LEU A  279  1                                  16    
HELIX   12  12 MET A  283  GLY A  309  1                                  27    
HELIX   13  13 SER A  333  ARG A  345  1                                  13    
HELIX   14  14 ALA A  356  GLY A  365  1                                  10    
HELIX   15  15 ASP A  366  VAL A  368  5                                   3    
HELIX   16  16 ASP A  373  VAL A  381  1                                   9    
HELIX   17  17 TRP A  390  LEU A  396  5                                   7    
HELIX   18  18 VAL A  409  ALA A  415  5                                   7    
SHEET    1   A 8 LEU A  65  PHE A  67  0                                        
SHEET    2   A 8 ARG A  26  TYR A  30  1  N  GLY A  29   O  SER A  66           
SHEET    3   A 8 SER A   3  LEU A   7  1  N  LEU A   4   O  ARG A  26           
SHEET    4   A 8 ALA A  80  ILE A  83  1  O  PHE A  82   N  SER A   5           
SHEET    5   A 8 LEU A 119  VAL A 122  1  O  VAL A 121   N  ILE A  83           
SHEET    6   A 8 SER A 149  SER A 152  1  O  SER A 149   N  VAL A 120           
SHEET    7   A 8 ILE A 172  ALA A 176 -1  O  GLY A 175   N  SER A 152           
SHEET    8   A 8 LYS A 196  MET A 199  1  O  LEU A 197   N  ILE A 172           
SHEET    1   B 6 THR A 369  TYR A 370  0                                        
SHEET    2   B 6 ARG A 348  HIS A 352  1  N  VAL A 351   O  THR A 369           
SHEET    3   B 6 HIS A 315  LEU A 319  1  N  VAL A 316   O  ARG A 348           
SHEET    4   B 6 GLY A 383  ILE A 386  1  O  GLY A 383   N  GLY A 317           
SHEET    5   B 6 VAL A 402  ASP A 405  1  O  VAL A 404   N  VAL A 384           
SHEET    6   B 6 ILE A 417  GLY A 420  1  O  GLU A 419   N  VAL A 403           
SITE     1 AC1 25 GLU A 155  PHE A 156  LEU A 157  ARG A 158                    
SITE     2 AC1 25 GLU A 159  LYS A 208  ASN A 212  ILE A 219                    
SITE     3 AC1 25 ARG A 248  TYR A 253  GLY A 255  GLY A 259                    
SITE     4 AC1 25 PHE A 260  GLY A 261  CYS A 264  PHE A 265                    
SITE     5 AC1 25 PHE A 323  LYS A 324  ARG A 407  HOH A1114                    
SITE     6 AC1 25 HOH A1123  HOH A1127  HOH A1142  HOH A1177                    
SITE     7 AC1 25 HOH A1226                                                     
SITE     1 AC2  6 GLY A 144  GLY A 145  GLY A 400  LYS A 416                    
SITE     2 AC2  6 HOH A1146  HOH A1278                                          
CRYST1  117.652   76.739   75.551  90.00 125.80  90.00 C 1 2 1       4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.008500  0.000000  0.006130        0.00000                         
SCALE2      0.000000  0.013031  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.016319        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
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