KEGG   Clostridioides difficile 630: CDIF630_01443
Entry
CDIF630_01443     CDS       T03885                                 
Name
(GenBank) ribonuclease J family protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
pdc  Clostridioides difficile 630
Pathway
pdc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pdc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CDIF630_01443
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdc03019]
    CDIF630_01443
Messenger RNA biogenesis [BR:pdc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CDIF630_01443
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2
Other DBs
NCBI-ProteinID: AJP10985
UniProt: Q18BF6
Position
1481314..1482990
AA seq 558 aa
MQLFKKNTNKIKVMALGGLNEVGKNMTVVEYKDEIIVIDAGLSFPEDEMLGVDIVIPDIT
YLVKNRDKIKGIFITHGHEDHIGALPYILKKINVPVYGARLSIGLIQVKLKEHKMNNVKL
NVIGPRQVIKLDNMEVEFLKNNHSIPDAYSIAIHTDQGIIYHTGDFKIDLTPIDGDVMDM
HRICELSKKGVLLMLADSTNAEKPGFTMSEKTVGVGLDELFAKGNGRRIIVATFASNIHR
LQQIINTAEKFNRKVAISGRSMVNVVGVAKELGYLDISDDMLIDLNDICKYEDSELVIIT
TGSQGEPMSALARMAFSEHKKVEIKSGDLVIISAHPIPGNEKLISRVINFLFEKGAEVVY
SDIADIHVSGHACQEELKLIHALVRPKFFMPAHGEYRMLKRHAEIAEQLGMDKENIFVMQ
TGDVLELDKNSAKVANRIQTGNILVDGLGVGDVGNIVLRDRKHLSEDGLMIVVVTISKDE
GKVLAGPDIISRGFVYVRESEDLMDGAKDIIKNVLNECEEKNIKEWAYLKNNIKENLKEY
LYQKTKRNPMILPIIMEV
NT seq 1677 nt   +upstreamnt  +downstreamnt
atgcaattgttcaaaaagaacaccaacaagataaaggtaatggccttgggtggacttaac
gaagttggaaaaaatatgactgttgttgagtataaagatgaaataattgttatagatgct
ggacttagttttccagaggatgaaatgttaggagtagatatagttataccagatataact
tatttagtaaaaaatagggataaaataaagggtatatttattacacatggacatgaagac
catataggagctcttccatatatattaaagaaaataaatgtacctgtatatggggcaaga
cttagtataggtcttatacaagtaaaacttaaagaacataaaatgaataatgttaagtta
aatgttataggtcctagacaagttataaagcttgataatatggaagtagagtttttgaaa
aataaccatagtataccagatgcttactctattgcaatacacacagaccaaggtataata
taccacacaggagattttaagattgacttgactcctattgatggagatgttatggatatg
catagaatctgtgagttgagcaaaaaaggagttcttttaatgctggcagatagtactaat
gcagaaaaaccaggatttactatgtctgaaaagactgttggggtaggtcttgacgaatta
tttgcaaaaggaaatggcagaagaattatagttgctacctttgcatccaacatacacaga
ttacaacaaataataaatactgctgaaaagtttaatagaaaagttgctatatcaggtcgc
tcaatggtcaatgtagttggagttgcaaaagaattaggatacctagatatttctgatgac
atgcttatagatttaaatgatatatgtaagtatgaagatagtgaattagtgataataaca
actggttcacaaggtgaacctatgtcagctcttgctagaatggctttttcagagcacaaa
aaagtagaaataaagagtggcgatttagttataatatctgctcatccaataccaggaaat
gaaaaattaatatcaagagtaatcaatttcttatttgaaaaaggagcagaagtagtatac
agtgatatagctgatatacacgtttctggacatgcctgtcaagaagaattaaaacttata
catgcattagttagaccaaagttttttatgccagctcatggtgaatatagaatgttaaaa
agacatgctgaaatagctgaacagcttggtatggataaagaaaatatttttgtcatgcaa
acaggagatgttttagaattagataaaaattctgctaaggtagcaaaccgtatacaaaca
ggaaacatattagttgatggtctaggagtaggcgatgtaggtaatatagttttaagggat
agaaagcatttatcagaagatggtcttatgatagttgtagttactatttccaaggatgag
ggtaaggtcttagcaggtccagatataatttccagaggattcgtatatgtaagagagtca
gaagatttaatggatggagcaaaggatataattaagaatgttctaaatgaatgtgaagag
aaaaatattaaagaatgggcttatttaaagaataatattaaagaaaacctaaaagaatat
ttatatcaaaaaactaaacgaaatccaatgatacttcctatcataatggaagtataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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