KEGG T00549: BDI

Parabacteroides distasonis: BDI_3550

Entry

BDI_3550          CDS       T00549

Name

(GenBank) DNA gyrase, B subunit

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

pdi Parabacteroides distasonis

Brite

KEGG Orthology (KO) [BR:pdi00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pdi03032]
    BDI_3550
   03400 DNA repair and recombination proteins [BR:pdi03400]
    BDI_3550
Enzymes [BR:pdi01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     BDI_3550
DNA replication proteins [BR:pdi03032]
Prokaryotic type
  DNA Topoisomerases
   BDI_3550
DNA repair and recombination proteins [BR:pdi03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BDI_3550

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c Toprim_4 HATPase_c_3

Other DBs

NCBI-ProteinID:

ABR45251

UniProt:

A6LHT7

Position

complement(4346646..4348601)

AA seq 651 aa
MSEEIKNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTSEKGLHHLVYEVVDNSIDEALAG
YCTYIDVVINEDNSITVTDDGRGIPVDIHEKEGKSALEVVLTVLHAGGKFDKGTYKVSGG
LHGVGVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVIDNTDKTGTTISFKPDGS
IFTVTEYKYDILATRLRELAFLNAGITLRLTDKRVLKEDGSFKSEVFHSDEGLKEFVRYI
DRSKEKLIPDVIHIVTEKQGIPVEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRRGL
TRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTGAV
DMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKLAD
CSSKDASICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEIQN
IYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIENG
YVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQLWD
TTMNPENRTLKQITIDNAAEADQIFAMLMGEDVGPRREFIEENATYANIDA

NT seq 1956 nt +upstreamnt +downstreamnt
atgagtgaagaaattaagaatacttctacagagtactccgcagatagtattcaagtactt
gaagggttagaggcagtacgaaaaaggccatccatgtatattggcgataccagcgagaaa
ggtctccatcacttagtgtatgaggtcgtagataactccatagacgaagcgctagccgga
tattgtacatacatcgacgtggtaatcaatgaggacaactcgatcacggttaccgacgac
ggccgtggtatccccgtggatattcatgagaaagaaggtaaatcagctttggaggtagta
ttgacggtgctgcacgccggcggtaagttcgacaagggaacctataaagtatccggtggt
ttgcacggtgtgggtgtatcttgcgtaaacgccctctctacttatctgaaagcggaagtt
cgcaggaacggtaaagtacatatgcaggagttctcttgcggaaagccgttgcacgacgta
caggttatcgataatacggataaaacaggtactacgatctctttcaagccggacggttct
atctttacggtcacggaatacaagtatgatatcttggctacccgtttgcgtgaattagcg
ttcttgaacgctggtattacgctacgtctgacagataagcgagttctgaaagaagacggt
tcattcaagtccgaggtattccattcggatgagggattgaaagagtttgtccgctatatc
gaccgttctaaagagaaactgattccagacgtaatccatatcgttaccgagaagcagggt
atccctgtcgaggtggcgttaacttataatacttcttacaatgagagcgtattctcttac
gtaaatgatattaacacgatagaaggtggtacacacttagccggtttccgccgtggcctg
acccgtacgttgaaaaagtacgccgaggattctaaattattggagaaagccaaggtggag
attcaaggggatgacttccgtgaaggtttgaccgccgttatctctatcaaggtagccgaa
cctcagttcgagggacagacaaagacgaagctgggtaatagcgaggttaccggtgcagtg
gatatggcgatcggtgaggcgttaggctattatttggaagaacatccgaaagaggcgaaa
ataatcgtcgacaaggtgatcttggccgctcaagcccgtcatgccgctcgtaaggctcgc
gaattggtacaacgcaaatctccgctgacaggaggtgggcttcccggtaaattggcggac
tgttcctctaaagacgcgtcgatctgcgaattgttccttgtcgaaggagactccgcaggt
ggtacggctaagcaaggacgcgaccgtaacttccaagcgatcctaccattgcgcggtaag
atcttgaacgtggagaaagcgatggatcataagatcttcgaaagcgaggaaatccagaac
atctatcgcgcgatgggcgtaaccgtcggtacggaggatgacccgaaagcgttgaacatg
gagaagctgcgttaccacaaggtgattatcatgaccgatgccgatgtggacggtagccac
atcgccacattgatcttgaccttcttcttccgccgtatgcgttccttgatcgagaacgga
tatgtgtatctggcgactcctcccctctatttgtgtaagaaaggtaaggttgaggaatac
tgctggaccgagcaacaacgtcagcagttcatcttaaaatatggaggaggcaacgagaac
tcgatccatacacaacgatacaaaggtttgggagaaatgaacgaccatcaattgtgggat
acgaccatgaacccggaaaaccgtacgttaaagcagatcacgatcgacaacgcagccgag
gctgaccaaatcttcgccatgttgatgggtgaagacgtaggccctcgccgcgagtttatc
gaggaaaacgctacatatgctaacatagatgcttaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (56)   

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