KEGG   Prevotella denticola: HMPREF9137_0903
Entry
HMPREF9137_0903   CDS       T01459                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pdn  Prevotella denticola
Pathway
pdn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pdn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HMPREF9137_0903 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdn03021]
    HMPREF9137_0903 (rpoC)
   03400 DNA repair and recombination proteins [BR:pdn03400]
    HMPREF9137_0903 (rpoC)
Enzymes [BR:pdn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HMPREF9137_0903 (rpoC)
Transcription machinery [BR:pdn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HMPREF9137_0903 (rpoC)
DNA repair and recombination proteins [BR:pdn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HMPREF9137_0903 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AEA21267
Position
1074457..1078830
AA seq 1457 aa
MAFKKDNKVKSNFSKITIGLASPEEILENSYGEVTKPETINYRTYKPERDGLFCERIFGP
TKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERAGHIELVVPVAHIWYFRSLPNKI
GYLLGMPTKKLDAVIYYEKYVVIQPGVVEGMKNADTEEDLNGSHKFDLLSEDEYLDIIDN
KLPEGNDRLDDSDPSKFIAKMGAEAVYDLLTGIDLDRLAGELRDRATTDSSQQRKTEALK
RLQVVEGFRQSVGVNRPEWMIMKIIPVTPPELRPLVPLDGGRFATSDLNDLYRRVIIRNN
RLKRLMEIKAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKSESNRPLKSLSDSLKGKQGR
FRQNLLGKRVDYSARSVIVVGPELRMGECGLPKLMAAELYKPFIIRKLIERGIVKTVKSA
KKIVDRREPVIWDILENVMKGHPVMLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAF
NADFDGDQMAVHLPLSNEAVLETQILMLQSHNILNPANGAPITVPSQDMVLGLYYITKLR
PGAKGEGLSFYGSEEAIIAYNEKRCDLHAQVKVIVDDLVDGKIQKRMVETSVGRVIVNQI
IPTEIGFFNGIISKKSLRGLIADVIKAVGMARACEFLDGIKNLGYHMAYVAGLSFNLDDI
IVPDEKKDIVGKGQDEVDQVKANYEMGFITDKERYNQVIDAWTHVNNNLKASVMKHMTEA
DQGFNAVYMMLDSGARGSADQIAQLAGMRGLMAKPQKAGAEGAQIIENPIISNFKEGMSV
LEYFIASHGARKGLADTAMKTADAGYLTRRLVDVSHDVIITEEDCGSLRGLECRALKNGD
ETIATLYERILGRVSVHDVINPTTGDIIVAAGEEITEAKAQAIEESPIEMVEIRSVLTCE
SKKGVCKKCYGRNLATARMVQMGEAVGVIAAQAIGEPGTQLTLRTFHAGGVAGNAAANAT
ITAKNEAKIEFDELRTVPFVDDEDKECQMVVSRLAEIHFIDPNTGIVLLTDNVPYGSSLY
FKSGDTVKKGDLICKWDPFNAVIVSEYAGVLRLHDVEEGVTYKAETDDATGLTERIITDS
RDKTKVPTVDIVKVGAEKGDDGLYAPSDILGTYNLPVGGHLEQVLQDGAEVKTGMTLVKI
PRSVGGAGDITGGFPRVTELFEARNPSNPAVVSEIDGEITMGKVKRGNREIIVTSKTGEQ
RKYLVSLSKQILVQEHDAVRAGTPLSDGIITPADILSIMGPTAVQEYIVNEVQDVYRLQG
VKINDKHFEIIVRQMMRKVRIDDPGDTTFLEQELVDKLDFAEENDRIWGKKVVTDPGDSE
NCYKGQILSVRKLRDENSSLKRRDLKLVQVRDAVQATATQILQGITRAALGTKSFMSAAS
FQETTKVLNEAALRGKTDYLEGMKENVICGHLIPAGTGLRQWQKLIVGSQEEHERMEANK
KNVLDYANQEAAEVTKE
NT seq 4374 nt   +upstreamnt  +downstreamnt
atggcttttaagaaagataataaagtaaagagtaatttcagcaagattactatcggactg
gcttcacctgaggaaatcctcgaaaactcctatggtgaggtgaccaagccagagaccatc
aactaccgtacctataaaccagagcgtgacggtctgttctgtgagcgtatcttcggtcct
acgaaagactatgaatgcgcctgcggtaaatacaagcgcatccgttacaaagggattgtc
tgcgaccgttgtggtgttgaggtgacggagaagaaggtgcgccgtgagcgtgccggacac
atcgaattggttgtcccggtggcccacatctggtatttccgtagtcttccaaacaaaatc
ggttaccttctgggtatgccaaccaagaagctcgatgctgttatttactacgagaaatat
gttgtcatccagccgggtgtcgtggaaggcatgaagaatgccgatacagaagaggacttg
aatggttctcacaagttcgaccttctttccgaagacgaataccttgacatcatcgacaac
aagctcccggaggggaacgaccgtctggatgattccgatcccagcaagttcatagccaag
atgggggcagaggcggtttatgacctccttacggggattgaccttgaccgtcttgccggc
gagctgcgtgaccgtgcgacaaccgactcgagccagcagcgcaagacagaggctctgaag
cgtctgcaggtggttgagggcttccgccagtcagtcggcgtgaacagaccggagtggatg
atcatgaagattattccggttacacccccggaactccgtccgctggttccattggatggc
ggccgtttcgcaacatccgacctcaacgacctctatcggcgtgtgatcatccgcaacaac
cgtctgaagcggctcatggagatcaaagccccggaggttatcctccgcaacgagaagcgt
atgcttcaggaagctgtcgattcactgttcgacaatagccgcaagtcgtcggcagtgaaa
agtgagagcaaccgtcctctgaagtctctctccgactcgctgaagggcaaacagggccgt
ttccgtcagaacctcctcggtaagcgtgttgactattctgcacgttcggtaatcgttgtt
ggtcctgagttgaggatgggcgaatgcggtctgccgaagctgatggcagctgagctttac
aagccgttcatcatccgcaagctcatcgagcgtggcatcgtgaaaaccgtcaagagtgcc
aagaagattgttgatcgtcgcgagccggttatctgggacatccttgaaaacgtcatgaaa
gggcatccggtcatgctgaaccgtgccccgacactgcaccgtctcggtatacaggctttc
cagccgaagctcatcgaaggtaaggctatccagctgcacccgctggcatgtacggcgttc
aacgccgacttcgacggtgaccagatggccgtccatctcccgttgagcaatgaggcagta
ttggaaacgcagattctgatgctccagagccacaatatcctcaatccggccaatggtgcg
ccgattaccgtcccttcacaggatatggtactcggtctctattatatcaccaagctccgt
ccgggtgccaagggtgagggactctctttctacggttcagaggaagccatcattgcttac
aacgagaagcgatgcgacctccatgcacaggtaaaggtcatcgttgacgaccttgtcgac
ggaaagatacagaagcgtatggtagagacttctgtcggtcgtgtcatcgtcaaccagatc
atcccgaccgagattggcttcttcaatggcattatttccaagaagtcgctccgcggtctc
attgccgatgtcatcaaggctgtcggcatggcacgtgcctgcgagttccttgacggtatc
aagaatctcggttaccatatggcctatgttgccggtctgtccttcaacctcgatgatatc
atcgtaccggatgagaagaaagacatcgtaggcaaggggcaggacgaggttgaccaggtg
aaggccaactatgaaatgggtttcattacggacaaggaacgttacaatcaggtcatcgat
gcctggacacacgtcaacaataacctcaaggcaagtgtgatgaagcacatgaccgaggct
gatcagggcttcaacgctgtttatatgatgctcgactccggtgcccgtggttctgctgat
cagattgcccagcttgccggtatgcgtggtttgatggcgaaacctcagaaagccggtgca
gaaggtgcccagatcattgagaacccgatcatctccaacttcaaggagggtatgtccgta
ctggagtacttcatcgcttctcatggtgcgcgcaagggtctggccgatacggctatgaag
acagccgatgccggatacctgacacgtcgtcttgtagacgtttcccacgatgtcatcatc
accgaggaggactgtggctctctccgtggactggagtgccgggcactgaagaatggcgat
gagaccatcgcaacgctttatgagcgcatcctgggccgcgtgtcggtacacgatgtcatc
aacccgacgacaggtgacatcatcgtcgctgccggcgaggaaatcaccgaagccaaagca
caggctatcgaggagtcgccgatcgagatggttgaaatccgttccgtacttacctgtgag
agcaagaagggtgtatgtaagaagtgttacggccgtaaccttgccactgcccgcatggtg
cagatgggtgaggcggtcggtgtcattgccgcacaggccatcggtgagccgggtacacag
cttaccctccgtacgttccacgccggtggtgtagctggtaatgctgctgccaatgcaacg
attactgcaaagaacgaggcgaagattgagttcgatgaacttcgtaccgtaccgtttgtc
gacgatgaggacaaggagtgtcagatggttgtcagccgtctggcggagatccacttcatc
gatcccaatacaggcattgttctccttacggacaacgtcccctacggtagttctctctac
ttcaagtccggtgacacggtcaagaaaggcgaccttatctgtaagtgggatccgttcaat
gccgttatcgtcagtgagtatgccggtgtcctccgtctgcacgatgtggaagagggtgta
acctataaggctgaaaccgatgatgcaacgggtcttaccgagcgtatcatcacggattca
cgtgacaagacgaaagtcccgacggttgatatcgtcaaggtcggtgccgagaagggcgat
gacggcctttatgcgccatctgacatcctcggtacttacaacctcccggtaggcggccac
ttggagcaggttctccaggacggtgcagaggtcaagacaggtatgacgcttgtcaagatt
ccgcgttccgttggcggtgctggtgatattacaggtggttttccacgtgtcaccgagctt
ttcgaggcccgtaacccgtctaatccggctgtcgtatcagaaatcgacggtgagattacc
atgggcaaggtaaagcgtggtaaccgtgaaatcatcgtgacttccaagaccggtgagcag
cgcaagtatcttgtaagtctgtccaagcagattctggtgcaggagcatgatgctgtccgt
gccggcactccactgtctgatggtatcattacaccggccgacatcctgtctatcatggga
ccgacggctgttcaggagtatatcgtcaatgaggtgcaggatgtgtatcgactccagggt
gtgaagatcaacgacaagcacttcgagattatcgttcgccagatgatgcgcaaagtgcgt
atcgacgacccgggtgatacgactttccttgagcaggaactggttgacaagctcgacttc
gccgaggagaatgaccgcatctggggcaagaaagtagtcactgatccgggcgattcggag
aattgctataagggtcagattctctctgtccgcaagctgcgtgatgagaattcaagcctc
aagcgtcgtgacctcaagctcgtccaggtgcgtgatgccgttcaggcaacggccactcag
attcttcagggtatcacacgggctgccctcggtacgaagagcttcatgagtgctgcctcc
ttccaggagacaaccaaggtgctcaacgaggctgctctccgtggcaagacagactacctt
gagggtatgaaagagaacgttatctgtggtcaccttatccctgccggtacgggactccgc
cagtggcagaagctcattgtcggatcacaggaagagcacgagcgcatggaggccaacaaa
aagaacgttcttgattatgccaaccaggaggcagcagaggttacaaaggagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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