KEGG   Photobacterium damselae subsp. damselae: CAY62_13485
Entry
CAY62_13485       CDS       T04927                                 
Name
(GenBank) DNA-formamidopyrimidine glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
pds  Photobacterium damselae subsp. damselae
Pathway
pds03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pds00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CAY62_13485
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pds03400]
    CAY62_13485
Enzymes [BR:pds01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     CAY62_13485
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     CAY62_13485
DNA repair and recombination proteins [BR:pds03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     CAY62_13485
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS zf-TFIIB HMBD Zn-ribbon_8 Auto_anti-p27 Ribosomal_S13 zinc_ribbon_2 DZR Lar_restr_allev DNA_ligase_ZBD
Other DBs
NCBI-ProteinID: ARR50427
UniProt: A0A1X9U454
Position
I:complement(2858182..2858991)
AA seq 269 aa
MPELPEVEVTRLGITPHVLHQTVTDIVIRNGRLRWPIPDDINQIKQQPITKVRRRAKYLL
LDTPVGSAIVHLGMSGSLRVLPAGTVPEKHDHVDLVLSSGEILRYNDPRRFGAWLWQPVD
TKHHVLAKLGPEPLTDAFTADYLQQKAKGKRTAIKQFIMDNHIVVGVGNIYANESLFSAG
IHPQKAAGEVTPQALTVLVDEIKAVLAFAIQQGGTTLKDFKNADGKPGYFAQELQVYGKG
GLPCPKCGTELAEVKIGQRATVYCPQCQQ
NT seq 810 nt   +upstreamnt  +downstreamnt
atgcctgaattacctgaggttgaggtaacccgtttaggaattaccccacatgttttacat
caaacagtaacggatattgttattcgtaatggacgcttacgttggccaattccagatgat
attaatcaaataaagcaacaaccgattactaaagtacgccgtcgagcgaaatatttgttg
ttagatacgcctgttggtagtgccattgtgcatttgggaatgtcggggagtttgcgtgtt
ttacctgctggaacggttcccgaaaagcacgatcatgttgatttggtattatcgagcggg
gaaatcctacgttataacgatccacgtcgttttggggcttggttatggcaacctgttgat
acaaaacatcatgtcttagcgaaattaggtcctgagccgttaaccgatgcattcactgct
gattatttacagcaaaaagcgaagggtaagcgcaccgcgataaagcaatttattatggac
aatcatattgtggtgggtgttggtaatatctatgccaatgagtcactgttttcggcgggt
atccatcctcaaaaagcggctggagaggtaactcctcaagcattgactgtgctggtggat
gaaattaaagccgtattagcttttgccattcaacaaggtggtacaacgctaaaagatttt
aaaaatgctgatggtaaaccaggctattttgctcaagaactacaagtatatggcaaaggt
ggcctgccgtgccctaagtgcggtactgaacttgccgaggtgaaaataggccagagggca
acggtttattgcccacagtgtcagcaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (23)   

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