KEGG   Prevotella dentalis: Prede_0215
Entry
Prede_0215        CDS       T02403                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit, predominant form
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pdt  Prevotella dentalis
Pathway
pdt03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pdt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Prede_0215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdt03021]
    Prede_0215
   03400 DNA repair and recombination proteins [BR:pdt03400]
    Prede_0215
Enzymes [BR:pdt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Prede_0215
Transcription machinery [BR:pdt03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Prede_0215
DNA repair and recombination proteins [BR:pdt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Prede_0215
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Ribosomal_L40e
Other DBs
NCBI-ProteinID: AGB27598
UniProt: F9D143
Position
1:282925..287259
AA seq 1444 aa
MAFKKDTKVKTNFTKITITLASPEEIKENSFGEVTKPETINYRTYKPERDGLFCEKIFGP
TKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERSGHIELVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDSVIYYEKYVVIRPGVLAGAKDIDGVEDLNGSHKFDLLSEDEYIDIIDN
KLDPNNDLLEDSDPNKFVAKMGAEAVLDLLGDLDLDSLSYELRDRANNDSSQMRKTEALK
RLQVVEAFRSSTAVNKPEWMIMKIIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNN
RLKRLMEIKAPEVILRNEKRMLQEAVDSLFDNSRKASAVKSESNRPLKSLSDSLKGKQGR
FRQNLLGKRVDYSARSVIVVGPELKMGECGLPKLMAAELYKPFIIRKLIERGIVKTVKSA
KKIVDRREPVIWDILENVMKGHPVLLNRAPTLHRLSVMAFQPKLIEGKAIQLHPLACTPF
NADFDGDQMAVHLPLSNEAVLEAQVLMLQSHNILNPANGAPVTVPSQDMVLGLYYITKIR
PGAKGEGLTFYGPEEAIIAHNEGRCDEHAQVKCMVDDVIDGKPVRHMVETSVGRIIVNGI
IPSEIGFFNGVISKKSLRGLIASVITSVGMARACSFLDGIKNLGYRMSYVAGLSFNLDDI
IVPEEKTEIVQKGQDEVDEVTSNFDMGLITDKERYNQVIDAWTHVNDRLKKAVMKHMTEA
DQGFNAVYMMLDSGARGSADQIAQLAGMRGLMAKPQKAGAEGNSIIENPILNNLKEGMSV
QEYFIASHGARKGLADTAMKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLECRALKDGD
EVISMLSERILGRVSVHDVINPHTNEVIVQAGEEITEPKAQAIEDAQIEMVEIRSVLTCE
SKKGVCRKCYGRNLATSKMVQMGEAVGVIAAQAIGEPGTQLTLRTFHSGGVAENAAANAS
IRSKYDARLKFDGLRTVPYVDKSGETEVDCQMVVSRLAEVQFIDPNTGIAMATHNVPYGS
SLFFGNNDVVKKGDVVCKWDPFNAVIVSEYAGTLRFRNVVEGSTYKAETDETSGMTERII
IESRDHNAVPMVDVLDAKGEVLGTYNFPVGGHIANIEDGQTIATGTTLVRISRSVFSAGG
ITGGLPRVTELFEARNPSNPAVVSEIDGEVSMGKLKRGNREIVVTSKTAEQRKYLVPLSR
QILVQEHDAVRAGTALSDGEVTPSDILAIQGPTAVQEYIVNEVQNVYRLQGVKINDKHFE
IIVRQMMRKVRIDDPGDTIFLEQQLVDKLDFGEENDRIWGKKVVIDAGDSDTLQKGQIVT
ARKLRDENSSLKRRDLKPVQVREAVPATSTQILQGITRAALGTKSFMSAASFQETTKVLN
EAAIRGKIDHLEGMKENVICGHLVPAGTGMRQWDRLIVGSKEEYERMEANKKNVLDYADP
VAAE
NT seq 4335 nt   +upstreamnt  +downstreamnt
atggctttcaaaaaagatacaaaggtaaagactaatttcaccaagattaccattactctt
gcctctccggaagagattaaggaaaattcgtttggtgaggtcaccaagcctgagacgatc
aactaccgtacttacaagcccgagcgcgacggcctcttctgcgagaagattttcggtccc
accaaggactatgagtgcgcctgtggcaagtacaagcgcatccgttacaagggtatcgtc
tgcgaccgttgcggtgtggaggtgacagagaaaaaggtgcgtcgcgagcgcagcggacat
atcgagctggtcgtgcccgtggcccacatctggtatttccgttctttgcccaacaagata
ggctatctgctgggcttgcccaccaagaagctcgattccgtcatctattatgagaagtac
gtcgtcatccggccgggtgtgctggctggtgccaaggatatagacggcgtggaggacctg
aacggttcccacaagttcgacctgctgtccgaggacgagtacatcgatatcatagacaac
aagctcgaccccaacaacgatttgctggaggattccgaccccaacaagtttgtggccaag
atgggtgccgaggcggtgctcgacctgctgggcgacctcgacctcgactcgctgagctat
gagcttcgcgaccgcgccaacaacgactccagccagatgcgcaagaccgaggccttgaag
cgtctgcaagtggtcgaggcattccgcagctccacggccgtgaacaagcccgagtggatg
attatgaagattattccggtcatcccgcccgaactgcgtccgctcgttccgctggacggc
ggccgtttcgccacgtccgacctgaacgacctctatcgccgcgtcatcatccgcaacaac
cgtctgaagcgcctcatggagatcaaggcccccgaggtcattctccgcaacgagaagcgc
atgcttcaggaggccgttgattccctcttcgacaacagccgcaaggccagtgccgtgaag
agcgagtccaaccgtccgctcaagtcgctctccgattctctcaagggcaagcagggacgt
ttccgtcagaacctgcttggcaagcgtgtggactattccgcccgttcggtcatcgtcgtg
ggtcccgagctgaagatgggcgagtgcggtctgcccaagctgatggcagccgagctctac
aagccgttcatcatccgcaagctcatcgagcgcggcattgtgaagaccgtgaagagcgcc
aagaagatcgtggaccgtcgcgaaccggtcatctgggacattctggagaatgtgatgaaa
ggccatcccgtgcttctcaaccgtgcccccacgctgcaccgtctgtcggtgatggcgttc
cagcccaagctcatcgagggcaaggccatccagcttcatccgctggcctgcacgccgttc
aacgccgacttcgacggcgaccagatggccgtccatctgcccttgagcaacgaggctgtg
ctcgaggcccaggtgctgatgctccagagccacaacatcctcaacccggccaacggcgca
cccgtcaccgttccttcgcaggacatggtgctcggtctgtactacatcaccaagattcgt
ccgggcgccaagggcgagggactcacgttctacggccccgaagaagccatcatcgcccac
aacgagggacgctgcgacgagcacgcccaggtgaagtgcatggtcgacgacgtgatcgac
ggcaagcccgtccgccacatggtcgagacctccgtgggccgcatcattgtcaacggcatc
atcccctccgagataggattcttcaacggggttatctccaagaagtcgctccgcggcctg
attgccagtgtgatcacttccgtgggcatggcccgcgcctgctcgttcctcgacggcatc
aagaacctgggttaccgcatgtcttatgtggccggcctttcgttcaacctcgacgacatc
atcgtgcctgaagaaaagacggagattgtgcagaaaggtcaggacgaggtcgacgaggtg
acctccaacttcgacatgggtctcatcaccgacaaggagcgttacaaccaggtcatcgac
gcctggacccacgtcaacgacaggctgaagaaggccgtcatgaagcacatgaccgaggcc
gaccagggcttcaatgccgtgtacatgatgctcgactccggtgcccgaggctctgccgac
cagattgcccagcttgccggcatgcgcggcctgatggccaagccgcagaaagccggtgcc
gagggcaactccatcattgagaaccccattctgaacaacctcaaggagggcatgtccgtg
caggagtacttcatcgcctctcatggcgcccgcaagggtctggccgacaccgccatgaag
acggccgacgccggatacctcacccgccgtctggtcgacgtgtcgcacgacgtcatcatc
aacgaggaagactgcggcacgctgcgtggcctggagtgccgtgccctgaaggatggcgac
gaggtcatctccatgctgtccgagcgcatcctcggccgtgtctccgtccacgacgtgatc
aatccccacaccaacgaggtgattgtgcaggctggcgaagagattaccgagcccaaggcc
caggccatcgaagacgcacagatcgagatggtcgagattcgctcggtgctcacctgcgag
agcaagaaaggcgtctgccgcaagtgctacggccgcaacttggccacctcgaagatggtg
cagatgggcgaggccgtcggcgtcattgccgcccaggccatcggcgagccgggcacgcag
ctcacgctccgcactttccactccggcggtgtggccgagaatgccgcggccaatgccagc
atccgttccaagtacgacgcccgcctgaagttcgacggtctgcgcaccgttccctatgtg
gacaagtcgggcgagaccgaggtggactgtcagatggtggtgagccgtctggccgaggtc
cagttcatcgaccccaacacgggcatcgccatggccacccacaacgtgccctacggcagc
tccctgttcttcggcaacaacgacgtggtgaagaagggcgacgtggtgtgcaagtgggac
ccgttcaatgccgtgattgtcagtgaatatgccggtacgctccgtttccgcaacgtggtc
gagggctccacctacaaggccgagaccgacgagacctcgggcatgaccgagcgcatcatc
atcgagtcgcgcgaccacaacgccgtgcccatggtcgacgtgctcgatgccaagggcgag
gtgctcggcacctacaacttccccgtgggcggccatatcgccaacatcgaggacggccag
accatcgccaccggcaccacgctggtgcgcatctcccgttcggtgttcagcgccggcggc
atcaccggcggtctgccccgtgtcaccgagctcttcgaggcccgcaacccgtccaacccc
gccgtggtttccgagatcgacggcgaggtgtccatgggcaagctcaagcgtggcaaccgc
gagattgtcgtcacctccaagacggccgagcagcgcaagtatctcgtgcccctgtcgcgc
cagattctggtgcaggagcacgacgccgtgcgggccggcaccgcactctccgacggtgag
gtcacgccgagcgacatcctggccatccagggccccacggccgtgcaggagtacatcgtc
aacgaggtgcagaacgtgtaccgactgcagggtgtgaagatcaacgacaagcacttcgag
atcatcgtgcgccagatgatgcgcaaggtgcgcatcgacgacccgggcgacaccatcttc
ctggagcagcagctcgtcgacaagctcgacttcggcgaggagaacgaccgcatctggggc
aagaaagtggtcatcgacgccggcgattccgacacgctccagaaaggccagatcgtgacg
gcccgcaagctgcgcgacgagaactccagcctgaagcgccgcgacctcaagcccgttcag
gtgcgcgaggccgtgcccgccacgtccacccagattctccagggcatcacgcgtgccgcc
ctcggcaccaagagcttcatgagcgccgcctccttccaggagaccaccaaggtgctcaac
gaggctgccatccgtggcaagatagaccatctggagggcatgaaggagaacgtgatttgc
ggccacctcgtccccgccggcacgggcatgcgccagtgggatcggctcatcgtcggttcc
aaggaggaatacgagcgcatggaggccaacaagaagaatgtgctcgactatgccgacccg
gtggcagccgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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