KEGG   Paenibacillus durus: PDUR_00030
Entry
PDUR_00030        CDS       T03297                                 
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
pdu  Paenibacillus durus
Brite
KEGG Orthology (KO) [BR:pdu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pdu03032]
    PDUR_00030 (gyrB)
   03400 DNA repair and recombination proteins [BR:pdu03400]
    PDUR_00030 (gyrB)
Enzymes [BR:pdu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     PDUR_00030 (gyrB)
DNA replication proteins [BR:pdu03032]
 Prokaryotic type
  DNA Topoisomerases
   PDUR_00030 (gyrB)
DNA repair and recombination proteins [BR:pdu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      PDUR_00030 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3 HVO_2248
Other DBs
NCBI-ProteinID: AIQ10599
UniProt: A0A089INA9
Position
4664..6574
AA seq 636 aa
MSMNQPTYDESQIQVLEGLEAVRKRPGMYIGSTSVKGLHHLVWEVVDNSIDEALAGYCDK
IQVIVHEDNSITVIDNGRGIPVGENPKLKKSTLEVVMTVLHAGGKFGGGGYKVSGGLHGV
GISVVNALSEKVIVTVKREGHAYQQEYRRGVPQYDIRTVGDTDETGTKTTFLPDPEIFTE
TTVYDYNTLLTRIRELAFLNKGIEISLTDERTGTSSSFKYDGGIIEYVKFLNEKKEVLHE
EPIYVGGSRDMIQVEVALQYNDSYTENIYSFANNIHTHEGGTHESGFKSALTRIINDYAR
KSGIIKDSSSNLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFGEKLQ
EFLEENPAISRRVLEKSLQASRAREAARKARELTRRKSALEVSSLPGKLADCSSKDASIS
ELFIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGTGI
GDDFDLSKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRKIVEAGFIYIAQPPLFKVER
NKVVRYAGSEKERDEIIATFGENAKFNVQRYKGLGEMNATQLWETTMDPESRSMLQVTIE
DAILADSIFDTLMGDNVEPRRDFIQEHAKSVKNLDI
NT seq 1911 nt   +upstreamnt  +downstreamnt
atgtcaatgaatcaaccgacatatgatgagagccagattcaggtgcttgaagggctggaa
gcagtccgtaagcgtccgggcatgtacattggttcgaccagcgtaaagggcttgcaccat
ctcgtatgggaagttgtcgataacagtattgacgaagcgctggccggttattgcgacaaa
atccaggttattgtgcatgaagacaacagcattaccgtcatcgataacggacggggaatt
cctgtcggagagaacccgaagctgaagaaatcgacgcttgaagtcgtcatgactgtcctg
catgcaggcggtaagttcggcggcggcggatataaagtctcgggcggtctgcacggagta
ggtatttcggtagtaaatgctctctcggaaaaggttattgttaccgtcaagcgcgaagga
catgcgtaccagcaggaataccgccggggcgtgcctcagtatgatattaggacggttggc
gataccgatgaaacgggcaccaagacgacctttcttccggacccggagatttttaccgaa
acgactgtgtatgactataatacgctgcttacccggattcgcgagctggccttcttgaac
aaggggatcgaaatctcgcttacggatgagcggaccggtacgtcgagctcgtttaaatat
gatggcggtattattgaatacgtgaagtttctgaacgagaaaaaagaagtgctgcacgag
gaacccatctatgttggcggttcccgcgacatgattcaggtcgaggttgctcttcagtac
aatgattcatataccgagaatatttattcatttgccaataatattcatacccatgagggc
ggtacgcatgaatccggattcaagagcgccttgacgcggattatcaacgattatgctcgc
aaaagcggcattatcaaggatagcagctccaacctgaccggtgatgacgttcgtgaggga
ctgacggcaatcatttccgtgaagatccccgagccgcagttcgaaggccagacgaagacc
aagctcggcaacagcgaggtccgcgggattgtggaatcgctgttcggcgagaagctgcag
gagtttcttgaggagaatcctgcgatctcccggcgcgtgctggagaagtcgctgcaggct
tcccgcgcacgggaggcggcgcgcaaagcccgcgagctgacgcgtcgcaagagcgctctt
gaagtcagctcactgccagggaagctggcggactgctcgtccaaagacgcttccatcagc
gaactgttcatcgtcgaaggcgactccgccggcggttcggccaagcagggacgcgaccgg
cattttcaggcgattttgccgctgcgcggtaaaattctgaatgtggagaaggcgcgcctg
gaccgtattctgtccaacgcagaaatccgcgcgattattaccgctctggggacgggtatc
ggagacgacttcgatttatccaaggcccgttatcataaggttgtcatcatgacggatgcg
gatgtcgacggcgcccatatccgcacactgctgctgaccttcttttaccggtacatgcgc
aaaatcgttgaagcgggctttatctacatcgcccagccgccgctgttcaaggtggagcgc
aacaaggttgtccgctacgccggatcagagaaggaacgggatgaaattatcgccaccttc
ggcgagaacgccaagtttaatgttcagcgctataaaggtcttggcgagatgaatgccact
cagctttgggagacgacgatggatcccgagagccgcagcatgctgcaggtaacgatagaa
gacgccattcttgccgacagcattttcgacaccctgatgggagataatgtggagccgcgg
cgcgattttatccaagagcatgccaagtcagtcaaaaatctggatatttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system