KEGG   Pedobacter sp. PACM 27299: AQ505_09390
Entry
AQ505_09390       CDS       T04140                                 
Name
(GenBank) ATP-dependent DNA helicase RuvB
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
pep  Pedobacter sp. PACM 27299
Pathway
pep03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    AQ505_09390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pep03400]
    AQ505_09390
Enzymes [BR:pep01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AQ505_09390
DNA repair and recombination proteins [BR:pep03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AQ505_09390
    RecFOR pathway proteins
     AQ505_09390
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 AAA_3 AAA_16 Mg_chelatase TIP49 nSTAND3 Rad17 NB-ARC TsaE MCM AAA_14 AAA_PrkA Sigma54_activ_2 AAA_18 RNA_helicase AAA_33 DUF815 NTPase_1
Other DBs
NCBI-ProteinID: ALL05686
UniProt: A0A0P0NEW7
Position
complement(2245481..2246503)
AA seq 340 aa
MNENLDPNAESLTPIERDIEKVLRPQAFEDFTGQEKIMENLKIFVEAAKLRGEPLDHVLL
HGPPGLGKTTLSYIIANEMGVGIKVTSGPVLDKPGDLAGLLTGLDEGDILFIDEIHRLSP
LVEEYLYSAMEDFKIDIMLESGPNARSVQISLNPFTLVGATTRSGLLTAPLRARFGINSR
LAYYDAKLLTTIVLRSSDILKTPITEEGAYEIARRSRGTPRIANALLRRTRDFAQIKGNG
QIDTAISRYALKALNVDEHGLDEMDNRILVTIIDKFKGGPVGLKTIATAVGEDEGTIEEV
YEPFLIQEGFLMRTSRGREVTEAAYKHLQKNFPGHTGQLF
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgaacgagaatctggacccgaacgctgaaagtttaacccctattgaacgcgatattgaa
aaagtattgcgtccgcaggcatttgaagactttacaggacaggaaaagatcatggagaac
ctaaagatctttgtagaggctgcaaagttacgcggagaacctttagaccatgttttatta
catggtcctccgggacttggcaaaaccaccctatcctatatcattgccaatgaaatgggc
gttggaattaaagtcacctcaggtccggtactggataaacccggcgaccttgctggttta
ttaaccggcctggatgaaggagatattctatttattgatgagattcacaggctgagccca
ttggtagaagaatacctgtattctgcaatggaggattttaagatcgatatcatgctggaa
agcggccctaatgcccgttccgtacaaatcagcctcaaccctttcactttagtaggtgcc
actacccgttccggattattgacagcgccgctaagagcgaggtttggaatcaactcccgc
ctggcttattacgacgcgaaactactgaccaccatcgtgctgcgctcttcagacattcta
aaaacacccatcaccgaagaaggtgcctatgagattgcacgccgaagcaggggaacacct
cgtattgccaatgctttactcagacgtacccgtgattttgcgcaaattaaaggtaatgga
caaattgataccgccatttccagatacgcactaaaagcattaaacgtagatgagcacgga
ttggacgaaatggacaatagaatcctggtcaccattatcgacaagtttaaaggcggtccg
gtaggtctaaaaaccattgccactgccgtaggtgaagatgaaggtaccatcgaagaagtt
tatgaacctttcttgattcaggaaggctttctgatgcgtacttcccgtggaagagaggtc
actgaagccgcctataaacatcttcaaaagaacttcccaggacatacaggtcaactattt
tag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (22)   
   Pfam (22)   
All databases (32)   

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