KEGG   Plasmodium falciparum 3D7: PF3D7_0520300
Entry
PF3D7_0520300     CDS       T00095                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2, putative
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
pfa  Plasmodium falciparum 3D7
Pathway
pfa03018  RNA degradation
pfa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PF3D7_0520300
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PF3D7_0520300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfa03019]
    PF3D7_0520300
   03041 Spliceosome [BR:pfa03041]
    PF3D7_0520300
Messenger RNA biogenesis [BR:pfa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PF3D7_0520300
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PF3D7_0520300
Spliceosome [BR:pfa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PF3D7_0520300
 Complex C
  U2 snRNP components
    PF3D7_0520300
SSDB
Motif
Pfam: LSM Hfq SM-ATX
Other DBs
NCBI-GeneID: 813019
NCBI-ProteinID: XP_001351761
PlasmoDB: PF3D7_0520300
UniProt: Q8I3Q7
Position
5:join(838428..838430,838552..838716,838940..839083)
AA seq 103 aa
MLFFTFFQQLAEKNHHVTVELKNDLQISGVLHSVDQYLNIKLTNVSVNNPEKYPHLLSIK
SCFVRGSVVRYVFLPSNEIDVQKLHHMCRQEAKMVAEKEKEKK
NT seq 312 nt   +upstreamnt  +downstreamnt
atgcttttttttacattttttcaacaactagctgagaaaaatcatcatgttactgtcgaa
ttaaaaaatgatttacaaatatcaggagttttgcattcagttgatcaatatttaaatata
aaattaacgaatgtgtcagtaaataatccagagaaatatcctcatttgttatcgataaaa
tcatgttttgttagaggatctgtagttagatatgttttcttaccttcaaatgagattgat
gttcaaaagttacatcatatgtgcagacaagaagcaaaaatggtagccgagaaagaaaaa
gaaaagaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PLASMODB (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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