KEGG   Plasmodium falciparum 3D7: PF3D7_0934100
Entry
PF3D7_0934100     CDS       T00095                                 
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
pfa  Plasmodium falciparum 3D7
Pathway
pfa03022  Basal transcription factors
pfa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PF3D7_0934100
  09124 Replication and repair
   03420 Nucleotide excision repair
    PF3D7_0934100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfa03021]
    PF3D7_0934100
   03400 DNA repair and recombination proteins [BR:pfa03400]
    PF3D7_0934100
Enzymes [BR:pfa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     PF3D7_0934100
Transcription machinery [BR:pfa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PF3D7_0934100
DNA repair and recombination proteins [BR:pfa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PF3D7_0934100
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 HBB ResIII DEAD AAA_7
Other DBs
NCBI-GeneID: 813610
NCBI-ProteinID: XP_001352206
PlasmoDB: PF3D7_0934100
UniProt: Q8I2H7
Position
9:1343385..1346555
AA seq 1056 aa
MVVFNLDDVEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSY
QYHKKDEGKFIFCTRTVAEMEKSLIELKKVIQYRINVMKQRKVEKLKNEKDDVNDVIKND
DVNDVIKNDDVNDVINNDDEEGANNSLDGSKENVKEYNKHDDHINNLKEFGENSEILAIG
ISARRCMCINDKVLLKHEREKIDEECRKLTATFIREKKYINNKIDNEIYHPNVDKISDFI
LRNRHHLDIEDYFDIYNSRNSLEEYDNIGLCGYYENYKKEFLYDLIKPGVYTIEDLKVLC
KNYKNKENVNVPICPYFCAKKIIEISKVIILNYQYVIDPKVSKALFSWKDMNKNVHLKNK
NDIIVFDEAHNIDSVCLEALSVNIDRNILNKASMNITKLMKKIEQSKMLNEQKLKEECNK
ILEKIKLQKCNQSLNVTNNVINIDNMKCINHMDNINKTRSDGNVGSYLEKETNKHHNIEG
KPGELFVTNEQEKKKRKVESSPVAYFDEDMNLMFSDFFLDESFGDNEKKKKNHDNNNDIN
NDDIKINDDIKNNDDINNDDRNNNDDINNNNNDRNNNNGRNNNNDRNNNNEDEDHLNDLC
YSPLLMEDIIKNVVIPGNIRKSEHFLNLMRIVVVYLKKYINIYDITSEGPLSFLYKFEKD
TKLDTSFFKYCFDRLKSLLNNLQIVNIEDYSSLNIVCNFCTLLGNYFKGFIIICEPYPEA
TGIYDPLIQFACLDSSIAMKTVINKYKSIILTSGTITPLELYPKLLNFKTVLTASFPMSF
DRNCVCPLIVTKGSDLIPLSSQFSLRNDLSVIKNYGILLVDMCKCIPDGIVAYFPSYIYM
EQVISSWYELGVIANILEYKLIFIETKDIVSTTIALHNFKKACDLGKGAVFLSICRGKIA
EGIDFDKHYGKCVILFGIPYQYTLSKILKSRLDFLKETYNIQENEFLTFDAMRQASQCVG
RIIRNKKDYGIMIFSDIRYAKHDKKNKLPPWIIKCMDISNINLTVTTAVDISKQFLLNMS
QEYRETGQTKISPLMLKNQVKCWTMVKSILNMDDFI
NT seq 3171 nt   +upstreamnt  +downstreamnt
atggtggtttttaaccttgatgacgttgagatttttttcccgtacgattatatttatcct
gaacaatatgcatatatgaaatatttaaaaaaaacgctagatagcgaaggacattgtgtt
ttagaaatgccgacagggacaggaaagacggtggctatattttcgcttattacatcgtat
caatatcataagaaggatgaagggaaatttattttctgtactcgtacggttgctgaaatg
gaaaagtcgctaatagaattgaagaaggtaattcaatacagaattaatgtaatgaagcag
agaaaggtagaaaagttaaaaaatgaaaaagatgatgtaaatgatgtgataaaaaatgac
gatgtaaatgatgtgataaaaaatgacgatgtaaatgatgtgataaataatgatgatgag
gaaggagcaaataattcattagatggctcaaaggaaaatgtgaaggaatataataagcat
gatgatcatataaataatttgaaagaatttggggagaacagcgaaatccttgccatcgga
attagtgccaggagatgtatgtgtattaatgataaggttttattaaaacatgaaagagaa
aagattgacgaagaatgtcgtaagttaacagcaacatttataagagaaaagaaatatata
aataataaaatagataatgagatatatcatccgaacgtagataaaatatctgattttatt
ttaaggaatagacatcatttagatatagaagattatttcgatatatataattcaagaaat
agtttagaggaatatgataatattggtttatgtggttattatgaaaattataagaaagaa
tttttgtacgatttaataaaaccaggtgtatatactattgaagatttaaaagtattatgt
aaaaattataagaataaagaaaatgtgaatgtacctatatgtccatatttttgtgcaaaa
aaaattattgaaatatcaaaagttattatattaaattaccagtatgttattgatccaaaa
gtttcaaaagcattattcagttggaaggatatgaataaaaatgtacatttgaaaaataaa
aatgatattattgtttttgacgaagcacataatattgatagtgtttgtttagaggcgttg
agtgttaacattgatcgtaatattttaaataaggcatctatgaatattacaaaattaatg
aaaaaaatagaacaatcaaaaatgttaaacgaacaaaaattaaaagaagaatgtaataaa
atactggaaaaaattaagttacaaaaatgtaaccaatcattaaatgttacaaataatgtg
ataaatatagataatatgaaatgtataaatcatatggacaatataaataaaacaagatca
gatggaaacgtgggttcttatttggaaaaggaaacgaataagcatcataacattgagggg
aaacccggggaattatttgtaacaaatgaacaggagaaaaaaaagagaaaggttgaaagt
agtccggtggcatattttgatgaggatatgaatttaatgttttctgatttttttttggat
gaatcgtttggagataatgaaaaaaaaaaaaaaaatcacgataataataatgatataaat
aatgatgatataaaaattaatgatgatataaaaaataatgatgatataaataatgatgat
agaaataataatgatgatataaataataataataatgatagaaataataataatggtaga
aataataataatgatagaaataataataatgaagatgaagaccatttaaacgatttgtgt
tatagcccattattaatggaagatattataaaaaatgttgtaataccagggaatattcga
aaatcagaacattttttgaatttaatgagaatagtagttgtatatttaaaaaagtatata
aatatatatgatataacatccgaaggtccactttcatttttatataaatttgaaaaggat
acaaaattggatacatcattttttaaatattgttttgatagattaaaatcattattaaat
aatttacaaatagtaaatattgaagattattcatcattaaatattgtatgtaatttctgt
acattattaggaaattattttaaaggatttataataatatgtgagccatatcccgaggca
actggaatatatgatccattaattcaatttgcatgtttagattcatcaatagcaatgaaa
acggtaataaacaaatataagtcaataatattaacaagtggtactattactcctttggaa
ttatatccgaaattattgaatttcaaaaccgttttaacagcttcattcccaatgtctttt
gatagaaattgtgtatgtccattaattgtaaccaaaggatctgatttaataccattatca
tctcaattttctttaagaaatgatttaagtgtaatcaaaaattatggtatcttattagta
gatatgtgtaaatgtatacctgatggtattgtagcttatttcccatcatatatttatatg
gaacaagttatttcgtcatggtatgaattaggtgttatagcaaatatattagaatataaa
ttaatttttatcgaaaccaaagatattgtatcaacaactattgctttacataattttaaa
aaagcttgtgatttaggaaaaggagcagtcttcttatctatttgtagagggaaaattgca
gaaggtatagattttgataaacactatgggaaatgtgttattctctttgggataccatat
caatatacattatctaaaatattaaaatctagattagacttcttaaaagaaacttataat
atacaagaaaatgaattcctaacatttgatgctatgagacaagcttcgcaatgtgttgga
cgaattataagaaataaaaaagattatggtattatgattttctcagacatcagatatgcg
aaacatgataaaaaaaataaattacctccttggattattaaatgtatggatatatctaat
atcaatctaaccgtaactacagctgtagatatatcaaaacaattcttattaaatatgtca
caagaatatagagaaacgggacaaacaaaaatatcaccccttatgttgaaaaatcaggtc
aaatgttggaccatggttaaatctatactaaacatggatgactttatataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PLASMODB (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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