KEGG   Plasmodium falciparum 3D7: PF3D7_1235900
Entry
PF3D7_1235900     CDS       T00095                                 
Name
(RefSeq) pre-mRNA-splicing factor SYF1, putative
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
pfa  Plasmodium falciparum 3D7
Pathway
pfa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PF3D7_1235900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfa03019]
    PF3D7_1235900
   03041 Spliceosome [BR:pfa03041]
    PF3D7_1235900
Messenger RNA biogenesis [BR:pfa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     PF3D7_1235900
Spliceosome [BR:pfa03041]
 Complex B
  Other components
   Prp19-related factors
    PF3D7_1235900
 Complex C
    PF3D7_1235900
SSDB
Motif
Pfam: BUD22
Other DBs
NCBI-GeneID: 811399
NCBI-ProteinID: XP_001350753
PlasmoDB: PF3D7_1235900
UniProt: A0A144A2S8
Position
12:complement(join(1497687..1497834,1498126..1498214,1498332..1498457,1498576..1498650,1498754..1501411))
AA seq 1031 aa
MALFGELYECEEFFNEETFNIKEGEFYNYDDYRDLEESFDYSAHPEYVESNDVTLINKNN
DDYDDDNKSYIKNIEIDIKENFDKISTRYLFLYINKYKEMYIKNMKGLYEVHFYDIHLKG
DKKSILATDHNIIEYCMENLMNINNNPDDNNNDTNNKSVHSSDNMHINKDERYNIYRDKK
KKKKKKRVYDLFCIYAIILKYFPYSFKLWYHYIKDSIEMITDVYYRNKKNYKYINKIFDQ
CLLYMYNFKSIYIMYIQFLYIQRDVKKIRQIFNLSLQNVYLNQQNDLWECQLLFNEKINN
KVINYEYIKRYVTIYPEQIIHLFKHYVKYKMYKNAMITFFYILNSEDNFDLGNFSKYDIY
QEIYKLLNSKGSLNNDIIHLLRNNLYIFKNYESITSIYILLANNFIYDGRWNKAMDSYEE
GISECYTVNDFITLFDNYIEMLKMLIDLNIYEQEEREKDILKKTLKRKKGKKKKKKKKKK
KKKKYDKEENILSDEDDDDDDNDDDNDDDNDDDNDNDNDNDDDNNNNNNNNNNNNNNSVD
IDTNLIIDLYMDKINYLLDQRKTYIADIKLKNNKNNVYIWLSKIDSIINEEEKIHLYDES
LRYFEKNDYTGKLSDIYISYAYYYYNKNEYTNCINIFKLALKQNAYFKSANEIANIFCAW
IEIELLERNYKEALNIARLSIDINKKSYNTLYKSSTSILLYEDISLNNNLKNKNNYHTNF
NLLSCMKLVSLIIDMEMNYGTIETTLNMFDFFYHSKCINVKMVLTLATYLYEKKYFNESF
KVYEKALSVFHYPYVYPIYVNYINKYIQRYKDKNISYVRDLFKQAIYGNDNKTFIPKEFA
KHIFLMYANFESNYGFIKKELSIYKEAIPFLEEPDKIKFYKIFISKVSRAYGIQKAREAF
EEAIQTLSDDSARQLCMIYIDMEYKLNEYERVRALYIYTAQYTNPLLYMDFYKDWREFEA
LHGNENTFREMIRIKRSVLNIFSNSRNNMEDEKQQKANMDALENTKRKLKEIIEKEEEHQ
KKLKRSELYNY
NT seq 3096 nt   +upstreamnt  +downstreamnt
atggctttatttggagaactgtatgagtgcgaagaattttttaacgaagagacatttaac
ataaaagaaggtgaattttataattatgatgattatagggatttagaagaatcgtttgat
tactcagcacaccccgagtatgttgaatctaacgatgtaactttaataaataagaataat
gatgattatgatgatgataataagagttatattaaaaatattgaaatagacataaaagaa
aattttgataagatatcaacaagatatttatttttatatattaataagtataaagaaatg
tatataaaaaatatgaaaggattatacgaggtccatttttatgatatacatttgaagggt
gataaaaaatcaatccttgcaactgatcataatattatagaatattgtatggaaaattta
atgaatataaataataatccagatgataataataatgatactaataataaaagtgtacat
agtagtgacaatatgcatattaataaggacgaacgttataatatttatagagataaaaaa
aaaaaaaaaaaaaaaaaaagagtatacgaccttttttgtatctatgcaataatattaaaa
tatttcccttatagttttaaattatggtatcattatattaaagatagcatagaaatgata
acagatgtatattatagaaataaaaaaaattataaatatataaataaaatatttgatcaa
tgtttattatatatgtataattttaaatcaatatatattatgtatattcaatttttatat
attcaaagggatgtaaaaaaaatccgtcagatatttaatctgtctttacagaatgtttat
ttgaaccaacaaaatgatttatgggaatgtcaactattatttaatgagaagataaataat
aaagttataaattatgaatatattaaaagatatgttaccatttatcccgaacaaatcata
catttatttaagcattatgtaaaatataaaatgtataaaaatgctatgatcaccttcttt
tatatcctaaatagtgaagataattttgacctcgggaatttttcaaaatatgatatttat
caagagatatacaaacttctaaattctaaaggatccttaaataatgatattatacatttg
ttgaggaacaatttatatatatttaaaaattatgaaagcataacatccatatatatatta
ttagccaataattttatatatgatgggagatggaataaagctatggattcttatgaagag
gggatatcagaatgttacaccgttaatgattttataactttatttgataattatattgaa
atgttgaagatgttaatagatctaaatatatatgaacaagaggagagagaaaaggatatt
ctaaagaagacattaaaaaggaaaaaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaatatgataaagaggaaaatatattatctgatgaggatgatgatgatgat
gataatgatgatgataatgatgatgataatgatgatgataatgataatgataatgataat
gatgatgataataataataataataataataataataataataataataacagtgttgat
atagataccaatttaattatagatttatatatggataaaataaattacctattagatcaa
cgtaaaacatatatagcagatataaaattaaaaaataataaaaataatgtttatatatgg
ttaagtaaaatagattctattatcaacgaagaagagaaaatacatttatatgatgagtct
ttaagatattttgaaaagaatgattacacaggaaaattaagtgatatatatattagttat
gcttattattattataataaaaatgaatatacgaattgtataaatatttttaaattagct
ttaaaacaaaatgcatattttaaaagtgctaatgaaatagcaaatatattttgtgcatgg
atagaaatagaattgttagaaagaaattataaggaggcattaaatatagctagactatcc
atagatataaataaaaaatcttataatacattatataaatcatcaacttctatattacta
tatgaagatatatcattaaataataaccttaaaaataaaaataattatcatactaatttt
aatttattaagttgtatgaaattagtatctctaattatagatatggaaatgaattatgga
acaatagaaacgacattaaatatgtttgatttcttttatcattcaaaatgtataaatgta
aaaatggtattaaccttagctacctatttatatgaaaaaaaatattttaatgaatctttt
aaagtatatgaaaaagcattatctgtttttcattatccatatgtatatcctatatatgtt
aattatattaataaatatattcaaagatataaagataaaaatatatcatatgtaagagac
ttattcaagcaagcgatatatggtaatgataataaaacatttataccaaaggaattcgcc
aaacatatattcttaatgtatgctaactttgaaagtaactatggatttattaaaaaagaa
ctctctatatataaagaggctatacctttcttggaagagccagacaaaattaaattttat
aaaatttttatctccaaggtatctagagcatatggaattcaaaaggctagagaagccttc
gaagaagcaatccaaactctatcagatgatagtgctcgacaattatgtatgatatacatt
gatatggaatataagttaaatgaatatgagcgtgtaagggccttatatatatatacagcc
caatacacaaaccctttattatacatggatttctacaaggattggagagaatttgaagcc
ttgcatggaaacgaaaacacctttcgagaaatgataagaataaagaggagcgttttaaat
atattttcgaattctcgtaacaatatggaagatgaaaaacaacaaaaagctaatatggat
gcattggaaaatacgaaaagaaaattaaaagagataattgaaaaagaagaggagcatcaa
aaaaaacttaaaagaagtgaattgtataattattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PLASMODB (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system