KEGG   Plasmodium falciparum 3D7: PF3D7_1443300
Entry
PF3D7_1443300     CDS       T00095                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5, putative
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
pfa  Plasmodium falciparum 3D7
Pathway
pfa03018  RNA degradation
pfa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PF3D7_1443300
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PF3D7_1443300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfa03019]
    PF3D7_1443300
   03041 Spliceosome [BR:pfa03041]
    PF3D7_1443300
Messenger RNA biogenesis [BR:pfa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PF3D7_1443300
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PF3D7_1443300
Spliceosome [BR:pfa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PF3D7_1443300
SSDB
Motif
Pfam: LSM LSM12_LSM
Other DBs
NCBI-GeneID: 811993
NCBI-ProteinID: XP_001348585
PlasmoDB: PF3D7_1443300
UniProt: Q8IL38
Position
14:join(1776010..1776070,1776274..1776353,1776498..1776662)
AA seq 101 aa
MATISGSETFLPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANN
VKKVNKIKKLLLNGLNITIMVPGGTPVNYYDYEEKLEENIA
NT seq 306 nt   +upstreamnt  +downstreamnt
atggctacaattagtgggtcagaaacatttttacccttggctttaatggataagtgtatt
ggaagtaaaatatggataatgatgaaaggcgataaagaaattgtaggtaaattggttgga
ttcgatgaatatgtaaatatggtattagaagatgttacagaatacacgtacgcaaataat
gttaaaaaagtaaataaaattaaaaaattattattaaatggattaaatataactattatg
gttccaggaggaactccagtgaattattatgattacgaagaaaagttagaagaaaatata
gcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PLASMODB (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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