#=GF ID   Arteri_nucleo
#=GF AC   PF01481.20
#=GF DE   Arterivirus nucleocapsid protein
#=GF PI   Arte_nucleocap;
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Prodom_2418 (release 99.1)
#=GF GA   22.10 22.10;
#=GF TC   22.10 23.30;
#=GF NC   22.00 21.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 --cpu 4 -E 1000 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR002484;
#=GF DR   SCOP; 1p65; fa;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF SQ   17
#=GS Q9YJF3_EAV/3-110         AC Q9YJF3.1
#=GS A0A167L7D6_9NIDO/2-102   AC A0A167L7D6.1
#=GS Q89680_LDV/2-113         AC Q89680.1
#=GS A0A159D6S1_9NIDO/2-110   AC A0A159D6S1.1
#=GS A0A222AIF8_9NIDO/24-140  AC A0A222AIF8.1
#=GS A0A6B9PSI9_9NIDO/3-118   AC A0A6B9PSI9.1
#=GS A0A1Z2RX66_9NIDO/2-118   AC A0A1Z2RX66.1
#=GS A0A089G0F3_9NIDO/4-112   AC A0A089G0F3.1
#=GS NCAP_PRRSL/7-122         AC Q04558.1
#=GS A0A0G2UH98_9NIDO/2-113   AC A0A0G2UH98.1
#=GS Q773G3_PRRSV/7-121       AC Q773G3.1
#=GS A0A0B5JFS1_9NIDO/18-132  AC A0A0B5JFS1.1
#=GS A0A0B6CFJ6_9NIDO/4-115   AC A0A0B6CFJ6.1
#=GS A0A0Y0BL84_9NIDO/32-109  AC A0A0Y0BL84.1
#=GS NCAP_EAVBU/3-110         AC P19810.1
#=GS Q87063_SHFV/3-111        AC Q87063.1
#=GS A0A2H4MZS4_9NIDO/4-122   AC A0A2H4MZS4.1
Q9YJF3_EAV/3-110                    ........................................SRRSRPQAASFRNGRRRQPTSYNDLLRMF..------.-....GQMRVR...K..PP....AQP....tQAII..AEPGDLRHELNQQERATLSSNVQRFFMIGHGSLT-ADAGGLTYTVSW-VPTKQIQRKVAPSAGP..........
A0A167L7D6_9NIDO/2-102              ................agkqnrqsrtpqskprrprrrppq-----------------------------..------.Q....SQSHQN...R..KQ....HEP.....SFVF..AAPDDLRMKLSVPNSKEILRLVCDLFNHGGGNLS-YENGYISYQAAI-APYGQLLRAIQ-----kls.......
Q89680_LDV/2-113                    ........................................SQNKKKS----GQNKGANQQLNQLINALL..RNAGQN.K....GKGQKK...K..KQ....PKL.....HFPM..AGPSDLRHVMTPNEVQMCRSSLVTLFNQGGGQCTLVDSGGINFTVSFMLPTHATVRLINASANS..........
A0A159D6S1_9NIDO/2-110              ....................................agkq------------NRQSRTPQSSKRRPRRP..RTKNNN.N....NNMQHRvspN..KP....AQP.....SFVF..ASPDDLRMKLSVQNSREILRLVTDLFNHGGGNLT-FENGYISYQAAV-APYGQLHRALQK----lsgp......
A0A222AIF8_9NIDO/24-140             .................................qrrrrrv----RRGNVNSQNVSKQIKELTQQFSKLI.pKNKDSV.H....YSLQAS...Y..GQ....EQP.....ELLVqpTLDSDVRYRIAKSDLSKLTTDVKKRLQAGAGSITKNPNGQVTVHLQF-FPPGA-----------vgrafip...
A0A6B9PSI9_9NIDO/3-118              .....................................nkn---QRQQPRKKGNGQPVN-QLCQLLGKMI..KQQSQNpK....GGRKQK...K..HS....EKP.....HFPL..AGEDDVRHHFNPQERGLCLASIQTAFNQGAGVCTMTDSGRIAYTVEFSLPHQHTVRLIRATT--ps........
A0A1Z2RX66_9NIDO/2-118              ..........................aknnkpraknpknt---------------SAG-DVVALLATAL..RGAQQP.K....NSKKKS...K..NQ....KQPapagvRFPL..ALPGDLRPTLNQRDYAAVRSAVVTCMNHGAGLMR-LNGDRIEFSVDC-TPDRKMLERISSTSSS..........
A0A089G0F3_9NIDO/4-112              rkpnnqkrnrkptaaprtrrgprlpqrtaapprrtggqsh-----------------------------..------.-....------...-..--....PTN.....HYVF..AEPGDVRLSLNAANAAQLRSLVFRYYDNGGGSLT-YDGLRLNFAAII-TPDAHL----------skvlarfaps
NCAP_PRRSL/7-122                    ........................................SQKKKKSTAPMGNGQPVN-QLCQLLGAMI.kSQRQQP.R....GGQAKK...K..KP....EKP.....HFPL..AAEDDIRHHLTQTERSLCLQSIQTAFNQGAGTASLSSSGKVSFQVEFMLPVAHTVRLIRVTSTS..........
A0A0G2UH98_9NIDO/2-113              ..................................agkpkq-------------NNKRKPQSQRRSS-SR..RQRPQS.N....RQAPRR...A..PQaphaQQPv...dHYVF..AEPGDLRVLLAPKHGVHIQSLLLRYYGNGGGRLT-FEDGRLNYSAVI-TPDVNLTRVL------qrlaap....
Q773G3_PRRSV/7-121                  ........................................KQQKRKK----GDGQPVN-QLCQMLGKII..AQQNQS.RgkgpGKKNKK...K..NP....EKP.....HFPL..ATEDDVRHHFTPSERQLCLSSIQTAFNQGAGTCTLSDSGRISYTVEFSLPTHHTVRLIRVTASP..........
A0A0B5JFS1_9NIDO/18-132             .................................agmprrk---------AHKNPQPAHQDLVKALSSLL..NKGQGP.KkgqaGSGSRQ...K..RH....ENA....lQYPL..AQPGDLRRMLKPTSAPMVRSALLSAFNSGGGILVGDADGKVTFTCDIQVPPR------------fihqpkqp..
A0A0B6CFJ6_9NIDO/4-115              kpktnktsspktrgkkrtrgnvtskssaqhpprqrrgpsa-----------------------------..------.-....------...-..QS....HET.....HYVF..AEPGDLRVSLAPQHATHIRALLLRYFDNGGGSLD-FQSGRISFQANI-TPPKQLERVIERATS-st........
A0A0Y0BL84_9NIDO/32-109             ...................................pvrag-----------------------------..------.-....-----R...E..PQ....TTN.....HYVF..AEPGDVRLAISQASASQLRQLVIRYYDNGGGSLT-YDGQRLNFAAII-TPNSQL----------akvlarlaps
NCAP_EAVBU/3-110                    ........................................SRRSRPQAASFRNGRRRQPTSYNDLLRMF..------.-....GQMRVR...K..PP....AQP....tQAII..AEPGDLRHDLNQQERATLSSNVQRFFMIGHGSLT-ADAGGLTYTVSW-VPTKQIQRKVAPPAGP..........
Q87063_SHFV/3-111                   .........................gkpktnnkgksqsrg---------------------GNRLPQRP..RRSTQQ.R....RAAPVH...K..PL....NET.....HYVF..AEPGDLRVVLPGPTSAHIKQLLIRYYDNGGGNLS-YDGQRINFAAIITPPHNMLKQLAKVTS--st........
A0A2H4MZS4_9NIDO/4-122              .......................................n-KNKKGKQPKKGNGQPVN-QLCQMLGKMLktQQRQAG.R....GGQKNR...KgrSS....EKP.....HFPL..AGEDDVRHHFNQVETRLCLASIQTAFNQGAGVCTMSDSGRIAYQVEFSLPTSHTVRLIRVTA--pt........
#=GC seq_cons                       .......................................t..............p.ht.p..p.hsthh..ttt.t..p....sthpt+...+..t.....ppP.....+ash..AtPuDlRhpLs.pctstlpu.lhphFspGuGslT.h-uG+lsassph.sPspph.Rhlt...............
//