#=GF ID Borrelia_orfA
#=GF AC PF02414.19
#=GF DE Borrelia ORF-A
#=GF AU Bateman A;0000-0002-6982-4660
#=GF SE Pfam-B_1805 (release 5.4)
#=GF GA 25.80 25.80;
#=GF TC 25.80 29.30;
#=GF NC 25.20 25.30;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP Family
#=GF RN [1]
#=GF RM 8636030
#=GF RT Circular and linear plasmids of Lyme disease spirochetes have
#=GF RT extensive homology: characterization of a repeated DNA element.
#=GF RA Zuckert WR, Meyer J;
#=GF RL J Bacteriol 1996;178:2287-2298.
#=GF DR INTERPRO; IPR003459;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF CC This protein is encoded by an open reading frame in plasmid
#=GF CC borne DNA repeats of Borrelia species. This protein is known as
#=GF CC ORF-A [1]. The function of this putative protein is unknown.
#=GF SQ 59
#=GS W6TK31_9SPIR/19-315 AC W6TK31.1
#=GS W6TH84_9SPIR/13-285 AC W6TH84.1
#=GS Q9S018_BORBU/18-121 AC Q9S018.1
#=GS O50966_BORBU/13-306 AC O50966.1
#=GS Q9S0J6_BORBU/16-303 AC Q9S0J6.1
#=GS W6TFD5_9SPIR/16-233 AC W6TFD5.1
#=GS Q9S0E5_BORBU/16-302 AC Q9S0E5.1
#=GS O50827_BORBU/188-295 AC O50827.1
#=GS O50774_BORBU/17-318 AC O50774.1
#=GS W6TW64_9SPIR/15-174 AC W6TW64.1
#=GS W6TGY4_9SPIR/53-269 AC W6TGY4.1
#=GS W6TVY9_9SPIR/18-235 AC W6TVY9.1
#=GS O50717_BORBU/30-316 AC O50717.1
#=GS O50827_BORBU/22-200 AC O50827.1
#=GS Q9S030_BORBU/14-121 AC Q9S030.2
#=GS W6TGX2_9SPIR/10-307 AC W6TGX2.1
#=GS H7C7K7_BORBU/51-355 AC H7C7K7.1
#=GS G5IXI7_BORBU/16-305 AC G5IXI7.1
#=GS O50682_BORBU/21-195 AC O50682.1
#=GS W6TFU6_9SPIR/17-138 AC W6TFU6.1
#=GS O50986_BORBU/13-289 AC O50986.1
#=GS W6TGD7_9SPIR/16-311 AC W6TGD7.1
#=GS W6TFK5_9SPIR/23-113 AC W6TFK5.1
#=GS W6TKB3_9SPIR/71-402 AC W6TKB3.1
#=GS W6TFQ7_9SPIR/15-223 AC W6TFQ7.1
#=GS W6TFS0_9SPIR/56-392 AC W6TFS0.1
#=GS W6TX07_9SPIR/56-385 AC W6TX07.1
#=GS W6TFK0_9SPIR/1-187 AC W6TFK0.1
#=GS Q9S029_BORBU/16-122 AC Q9S029.1
#=GS O50663_BORBU/7-104 AC O50663.1
#=GS W6TGJ5_9SPIR/2-35 AC W6TGJ5.1
#=GS Q9S027_BORBU/28-317 AC Q9S027.1
#=GS W6THA8_9SPIR/1-119 AC W6THA8.1
#=GS W6TG27_9SPIR/10-307 AC W6TG27.1
#=GS O50682_BORBU/179-285 AC O50682.1
#=GS W6TK52_9SPIR/12-299 AC W6TK52.1
#=GS W6THI6_9SPIR/12-321 AC W6THI6.1
#=GS H7C7P7_BORBU/16-302 AC H7C7P7.1
#=GS O50752_BORBU/26-418 AC O50752.1
#=GS O50855_BORBU/37-144 AC O50855.1
#=GS O50873_BORBU/16-303 AC O50873.2
#=GS W6TGA7_9SPIR/17-234 AC W6TGA7.1
#=GS Q9S081_BORBU/16-302 AC Q9S081.1
#=GS Q9S0B5_BORBU/16-303 AC Q9S0B5.1
#=GS W6TJ85_9SPIR/1-86 AC W6TJ85.1
#=GS Q9S024_BORBU/1-113 AC Q9S024.1
#=GS W6TFI3_9SPIR/1-65 AC W6TFI3.1
#=GS W6TWL2_9SPIR/11-304 AC W6TWL2.1
#=GS W6TGQ9_9SPIR/15-228 AC W6TGQ9.1
#=GS O50856_BORBU/16-121 AC O50856.1
#=GS W6TGZ1_9SPIR/10-297 AC W6TGZ1.1
#=GS W6TJF7_9SPIR/29-324 AC W6TJF7.1
#=GS W6TFX5_9SPIR/3-128 AC W6TFX5.1
#=GS Q9S042_BORBU/16-303 AC Q9S042.1
#=GS Q9S067_BORBU/16-302 AC Q9S067.1
#=GS Q9S020_BORBU/14-124 AC Q9S020.2
#=GS O51031_BORBU/10-306 AC O51031.1
#=GS W6TFM2_9SPIR/13-351 AC W6TFM2.1
#=GS Q9S0H4_BORBU/16-303 AC Q9S0H4.1
W6TK31_9SPIR/19-315 .............................KYQHKLITLISTISYINRQF......KKYS....................QNRILYYFNGNLKRNGQKEIKIKTLQ...SYLYKLEKEFQVTNNYYQHLG....INMGTAI.YYKLQYSK.......................................KECYRRI..NKNFKERK.....EK.....RHLNRINKYYq....nKKAYNKNSSVEKWECI..NNI-NNSNNK...EE....KTKLIEKLQVMKYVKKC....................................KFKTDEFLSILN.............LEI.SK.DEKIKALREIKRDENRLR................................KNFQNrmky.dgnnQNKLQFKQQELSSILDKAKVKLEKKGYNEKQLEKE...VQKVYEKYKSKPHFI.............IENDRY....CDLKKIIGK.IEMSCKK.DRKNMQDNEK.NIKDNIFS.........................
W6TH84_9SPIR/13-285 ............................k-VVDRRLKVFWVIKKLQHNYft..nkKRYS....................LRNVVIMVNSILAKNGFKTVTRRTIQ...SDITSIEK-IGLLKTDFNPLG....KNNGSFT.YYIINKNL.......................................EKMANKAisTAYFIQKK.....KN.....-TEQAIDKAI......-----NKDKLKEQK--..--------QQ...FK....ISHQIFSCLL-SYKKDK....................................YYKYKNSYFKEK.............KSG.EE.H----LEKIILQKFNITK................................KDLSE.........IRNIVKTKLSYKNTLWNLKDFMEALREYKENDVVV..fFKTVLKKKRDKIWFM.............--SKRGv..kTDFNFMIGS.FKDKNKT.KAQQMYQNQR.KI------lapkmn...................
Q9S018_BORBU/18-121 ..........................kfa--KNKLIILVKTLDHMNQELfy.senKDYT....................HLLIKSKFNLALAKTTQHEVNYKTLL...EYLEILEKNPKVIVKCPTN--....KENESFIgRYTLLYPL.......................................EVCCTKI..YN------.....--.....----------......----------------..----------...--....-----------------....................................------------.............---.--.------------------................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------lhpn.....................
O50966_BORBU/13-306 .............................KTQHKSIVLISTLEYINKTH......NKYT....................QKNILYYFNENLKRNGQLPVKIKTLQ...NYLYKLEKEIKVTTNYHKHLG....VNCGTEI.YYQLNFSK.......................................KECYQKI..YKYFQEKK.....DL.....RFQNRATRGL......KDRFTKNGSVDLKECL..NN--KNNIKE...ER....KINEIEKYQVRNYFNKC....................................NFLCKKILSIFLti........lfnLDI.DK.DNIIKILKIIKIIEIKLL................................KNKNIh......ftKSCMKEKQEKLKKILCNTQKEFEKNEYNPKQLEIS...FQKIYENYKFKPHFI.............IESHKY....SDLNNIKRK.LEKSIER.KKENSQQNYQ.DLKTNIFN.........................
Q9S0J6_BORBU/16-303 .............................KHQHKLIYLASTLDFLNKKD......KKYT....................QQNILYYYNENLKRNGLAPTTLRTMQ...NYLYKLEKVLKVTTNYYQHMG....VNCGTEI.YYKLKYPK.......................................KECYQKI..NKYFKERK.....NS.....RFKSRVNNHF......KDNVSKNSSVNSVECL..SN--KNNIKE...ER....KINEIEKYQVIKYFNKS....................................NFLCKEILPFLL............tLNV.DK.DTMIKIIKNIKRVENKLL................................KNTNL........nKSCFKEKQEKLKKILNNTQKEFEQNGYNPEQLKTN...LQKVYENYKFKPHFI.............IERHKY....NDLNNIKRK.LEKAIER.EKQNSQQNYQ.NLKENIFN.........................
W6TFD5_9SPIR/16-233 .............................KYHNRYYKIVSIVKFFQKNS......IKYN....................QTSILNTLNRFLAKDELKIITLRTLR...KDL-ALLCNKGIIKKTLLRLG....EGNGSYI.RYAAN---.......................................KYSLRNL..KRFLEDKQ.....AI....vEHDANATYKF......TKETQQKYYLKNKGLN..IHKSKNA---...--....TKNVSHNITNNKKINNK....................................KNKKEEKKEIGK.............KTI.DT.NYMIKNVAKWKTMRYLDK................................-----.........-VKENANKKRYENSIIRTQEWLRNLK---------...---------------.............------....---------.-------.----------.--------ienntckd.................
Q9S0E5_BORBU/16-302 .............................KHQHKLIYLTSTVDFLNKKD......KKYT....................QQNILYYYNKNLKRNGLAPTTLRTMQ...NYLYKLEKVLKVTTNYYQHMG....VNCGTEI.YYKLKYPK.......................................KECYQKI..NKYFKERK.....NS.....RFKSRVNNHF......KDNVSKNSSVNSVECL..SN--KNNIKE...ER....KIKEIEKYQLRNYFNNC....................................NFKTEEALSILY.............LNT.DK.DTKIEAINILKQNEIALI................................KKFNI........kKSCMKEKQKKLKEILYNTRKKLEENGYNPKQLEIN...LQKVYENYKYKPHFI.............IENHKY....NDLGYIKRK.LEKSIER.KKENSQQNYQ.NLKENIFN.........................
O50827_BORBU/188-295 ...........................si--------------------......----....................--------------------------...---------------------....-------.--------.......................................-------..--------.....--.....----------......----------------..----------...--....-----------------....................................------------.............---.--.-------------ENSFL................................KKIKS........iVSNTKNPIKTLKNTLLNYKDFKNYLKYDYEVKDIKeffLSKL-NIYKHKIHFM.............RKIAPY...kTDFYTLAGE.FKDIYTTkWKA-------.--------dkitsfsghagtiann.........
O50774_BORBU/17-318 ........................kllsk--DSRLKKIISVINYLNKSF.....eKKYDisiyrihfnseklkelyphhQIDILRVLNSNISKEGYKPTVIRTLRedlRFLIHIKAIEKKILTFSNNLG....KFKGKLC.IYKVS---.......................................PIAYKLI..SAYFEAYK.....AD.....LYRKI--KKS......KDGLDTQNVTKNVTVY..INYHKNIY--...--....NKNSIETVFKKSYTKKK....................................TKKKNKKEFTKNnl........ekrLKL.PE.EITKEIISIAKKTK----................................-----.........-----NPDKTYKNTLFNYKDFLNYLSYDYKKEDISyffLSKL-KEYKNKIHFM.............---RKYapykTDFYLLAGE.FKDSYHSkWKTNKKTNFSgHVKEIANN.........................
W6TW64_9SPIR/15-174 ............................kKNQVRLIKLISVLKYLNKNR......LGYT....................QQDILNLINFFLKKEGYAVIKMKTLQ...KDL-GFMKKHHIIKAFIIRLG....EYRGSKI.KYIPKKNAyrilgq...........................vldateE------..---LLEKT.....FN....iIYKLSKEEKE......KNKNELKNSTKNSSVY..NTIYNNIN-N...IK....KKMKIKQQKQ-------....................................------------.............---.--.------------------................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------qsnkkt...................
W6TGY4_9SPIR/53-269 ........................kmlkr--YNRIIKVYWAINTKNTNYkqsmgiEEYS....................ACDIQKIVLKLLENDAAKKVCKRTLEldiK----LLNNLNLIKSKIIRFG....KGKGSVA.YYVQNMELmpth..............................kdailEYLTQML..QDNLKDKI.....IIg..nfDLNEPFDNEP......KNINSKTTKFITK-KI..EE-KNNEQLH...KN....RMGIISHVQTPDVINKA....................................NISNINKENSKN.............SLE.KN.SAKSLSCEKPKSDEQKSE................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------kvrfkr...................
W6TVY9_9SPIR/18-235 .............................KYHNRYYKIVSIVKFYQKNS......IKYN....................QTSILNTLNRFLAKDELKIITLRTLR...KDL-ALLCNKGIIKKTLLRLG....EGNGSYI.RYSAN---.......................................KYSLRNL..KRFLEDKQ.....II....vEHDANATYKF......TKETQQKYYLKNKGLN..IHKSKNA---...--....TKNVSHNITNNKEIKKK....................................KNKKEEKKEIGK.............RTI.DT.NYMIKNVAKWKTMRYLDK................................-----.........-VKENANKKRYENSIIRTQEWLRNLKIE-------...---------------.............------....---------.-------.----------.--------nntckd...................
O50717_BORBU/30-316 .............................KYQHKLIALIATLEYINKNK......KKYN....................QSDILYCFNSNLRRNGQKEVSIKTLR...NYFYKLEK-LNITINYYRHLG....INMGTEI.YYALRHSK.......................................KDCYNLL..NQHFRNKK.....TE.....RFQRRVNVYI......KINYDKKDNVKNGECL..NNKYKKEERE...TE....RKKRINKLKLKKYAKKC....................................NFDNEISSFIIN.............LNL.KK.ETTIKLFKFIIKEKYYFK................................KENKCn.......lQKTLQNKKRDLISILRKTQKILIKEGCDKKKIKTQ...IQNTYQKYKNKPHFI.............LESNKY....KDFDQIIKK.IKDDT--.NKTEPQKHKD.NIETNIYN.........................
O50827_BORBU/22-200 ...........................sk--DCKLKKIISVIIYLNKEF.....eKKYNesihrihfdpeklkeirvhhQGDILRVLNSNIHRENKKETTINTLRidlRFLVKLKALEKRMLTFSNNFG....EFRGKLC.IYKAS---.......................................PIAYKLI..DTYFSNTK.....SDlikkvKKEKDVLREK......KEHCKPQNITENITVY..NKQYINIY--...--....NKNSIENSFLKK-----....................................------------.............---.--.------------------................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------iksi.....................
Q9S030_BORBU/14-121 ..........................dht---CRILILTETIFEINLIL......ENYS....................QKTLLKKYNENLKNKNLPPSNISTMK...KYLNQLEKEIKIIAKFYF---....KNDQSLI.YYKLNYTL.......................................EKIWLKL.iELFYKELK.....-Q.....----------......----------------..----------...--....-----------------....................................------------.............---.--.------------------................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------fiqknttt.................
W6TGX2_9SPIR/10-307 .............................KYQHKLIVLISTLNYINSKF......KQYN....................QNKILYYFNNNLNNNGQKKATLKTLQ...SYLYKLEKEFHVTSNYYRHLG....ENCGTEI.HYKLRFSK.......................................KVCHYKI..NRHFKDKK.....ED.....KFQQRANSYHqqtctnNGSLKKNGSAEKWECI..NNNSNNKNNK...KKkkelEKKERENAQLEKYIKKC....................................EFKDDKYLSILN.............LET.TK.EIKIEKLIELKKEENRRE................................RERNK.........NKKLVDKQQELEKALAETKEVLKKEGYNEKQLETE...IQKAYEKYKDKPHFI.............VESGKY....GDLGQIVKR.IKKTVEC.KKKGQKEDNQ.RIRNNIFS.........................
H7C7K7_BORBU/51-355 ..........................aiy---QRILKVCWAIDLKNKQYyksnklKTYS....................TIEIHNIVNKCLAKDNKK-ISIRTLEydiSFL----NQILLIKTKLKHLG....KDNGSFA.FYIQNKNLwkhr..............................fiiiqEAINKEI..KEYLKDKK....iVS.....DFFKEINNTI......-----NKNNIRNI---..----------...-K....PKSSIADESIADVIPKGi.................................kgINKIENSIEKNNgk........inkISY.KE.YIANKLVEVHKIEKMQIT................................----K.........ILKISNNEKTYINALRNLKLAIEKYKEEYKIEDISnhfIKEFKNKYSKKIWMMngktdr.tndfyeIWEKRFk..kTFLNKNLKKqYRSNYEK.ENKKIINNEK.--------rvsiifsn.................
G5IXI7_BORBU/16-305 .............................KVQHKLIVLISTICYLNKTH......KKYT....................QKTILYYFNENLRKNGQTISTLRTMQ...KYIYRLQKEIKVTTNYYQHMG....VNSGTEI.YYKLNYPK.......................................KDCYHKI..NQHFKEKK.....EE.....RYQNRVANYF.....nKNSDSKMGSVQLGECN..NN--NNNIKE...ER....KINEIEKYQVIKYFNKC....................................DFSCKEILPVLL............tLNI.DK.ENIIKIIKILKITEINSK................................-NKNIr......ptKSCIKKKQEKLKGILCNTQKELEENGYNPKQLEIN...FQKIYENYKYKPHFI.............IENHKY....SDLNNIKRK.LEKSIER.KKENSQQDYE.NLKINVFN.........................
O50682_BORBU/21-195 ...........................ic----RLKKIISVINYLNKEF.....kKKYNtsinkehftskkvkelrvhhQGDILRVLNSNIHRENKKETTINTLRldlKFLVKLKALEKRILTFSNSFG....EFKGKLC.IYKVS---.......................................PIAYKLI..NAYFNNTK.....ID.....LLKKV--KEE......KESFKPKNITENITVY..NKQYINIYNK...NS....IENS----F--------....................................------------.............---.--.------------------................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------fkriksiifnak.............
W6TFU6_9SPIR/17-138 .............................KYQHKLIVLISTIDYANHKY......EKYT....................QGDLLYYFNGNLKRNGQKETTIKTLQ...KYIYKLGKEFKVTNNYYQHLG....INMGTEV.YYELKYNK.......................................KECHRLI..NKNFKIKK.....EK.....DSKSALMNIL......KANSIK----------..----------...--....-----------------....................................------------.............---.--.------------------................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------rgv......................
O50986_BORBU/13-289 ............................k-VVDRRLKIFWVIQKLSANYfi..skKKYS....................LSNVVAMTNSILEKKGFKRVTKRTIQ...NDI-KIFETLGLIKSHFNPLG....KNNGSFT.YYTINKAL.......................................EKLAKKIisTAYFIDKK.....--.....---------T......KHEKSKNKQLKKIKII..EESQKYK---...--....ISHQITSHVLSNNISKK....................................YKNSKYSFRRKN.............QNI.KK.TINFLEKEIKKKSKSINL................................---EE.........IKKITENDITYKNSLWNLKDFMEELKEYEEKKIIK..fYKKNLEKKKQKIWFM.............--AKKFk..nTDFDKLIKK.FKIKNKM.EREKNYENEN.QIHTSNN-ikn......................
W6TGD7_9SPIR/16-311 .............................KYQHKLIVLISTIDYTNHKY......EKYT....................QGDLLYYFNGNLKRNGQKETTIKTLQ...KYIYKLGKEFKVTNNYYQHLG....INMGTEV.YYELKYNK.......................................KECHRLI..NKNFKIKK.....EK.....RFQKRVNAHF......KSKFNKEGSVEKAESL..YNKYNKNKKE...EK....CTNQIEDFQLKKYANKC....................................NFKTSFFYNLLK.............LNL.EK.EVKIELLRKLKNAENAIE................................RRSIGdikkggdkgCVTLKEKQDKLSLVLENVVTELKNEGYDSADLEAK...MGFIYEKYRNKPHFI.............IEEERY....GDLGVIVGN.LKNTVK-.KTKNLKSQYD.DLKNNIFS.........................
W6TFK5_9SPIR/23-113 .............................KYQHKLIVLISTLNYINSKF......KQYN....................QNKILYYFNNNLNNNGQKKATLKTLQ...SYLYKLEKEFQVTSNYYRHLG....ENCGTEI.HYKLRFSK.......................................KNM----..--------.....--.....----------......----------------..----------...--....-----------------....................................------------.............---.--.------------------................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------sl.......................
W6TKB3_9SPIR/71-402 ...........................kr--YKRIIKVYWAINTKNTNYkksmgvEEYS....................ACDIQKIVIKLLENDAAKKVCKRTLEldiK----LLNNLNLIKSKIIRFG....KGKGSVA.YYVQNMELmpth..............................kdailEHLIQIM..QDNLKDKI.....--.....IIKNFALDEP......FDNEPKNINSKTTKFI..TEKIEEKNNEqlhKN....RMGIISHVQAPDVINKAnis..............................ninKKNSKNSLEKNSakslssekqksekVQF.KRiGVKTRLIDVHKISRNYMQ................................----Q.........VKELSNNDSTYVNALLNLETAINEYGKEYDIEDILkhfLKQFGNRYKYKVWMMmkrkdgvindydlIWEGRF....KDWYSHKHK.--KNYTT.TKE-------.--------rygekirlasknfe...........
W6TFQ7_9SPIR/15-223 ...........................qy--HTRYYKILSILKYFQKNA......INYN....................QAKILNTLNFFLKKDDIKITTLRTLR...QDLCFLCK-NNIIEKTLIRLG....KGNGSYI.RYTVN---.......................................KYSNNNL..NRLLESKQ.....SIv...eHDANAIYKFT......KKTQKRYLQNKKVKIY..KP--KNVSHI...IN....NKKEIKNEKKDDIIFKI....................................SKVAKGKTMKYL.............DKI.EE.NKNKKRYEESIFR-----................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------vknwlkqsklvefanrehdnqgnak
W6TFS0_9SPIR/56-392 ...........................kr--YKRIIKVYWAINTKNTNYkqsmgiEEYS....................ACDIQKIVLKLLENDAAKKVCKRTLEldiK----LLNNLNLIKSKIIRFG....KGKGSVA.YYVQNMELmpthkdaileyltqmlqdnlkdkiiignfdlnepfdnepKNINSKT..-TKFITKK....iEE.....KNNEQ---LH......KNRMGIISHVQTPDVI..NKANISNINK...EN....SKNSLEKNSAKSLSCEK....................................PKSDEQKSEKVR.............FK-.RI.GVKTRLIDVHKISRNYMQ................................----Q.........VKELSNNDSTYINALLNLETAINEYGKEYDIEDILkhfLKQFGNRYKYKVWMMmkrtdgvindydlIWEGRF....KDWYSHKYK.--KNYTT.TKEK------.--------ygerirlasknfe............
W6TX07_9SPIR/56-385 ............................k-RHNRLTKVYWAINTKNTNYkqsmgiEEYS....................ACDIQKIVLKLLENDTAKKVCKRTLEldiK----LLNNLNLIKSKIIRFG....KGKGSVA.YYVQNMELmpthkdtileyltqmlqdnlkdkiiignfdldetfdhepKNTNLKT..TNFIKEKI.....KE.....KNKKQLH---......KNRISIISHVQNSDDF..SKANISNINK...EN....SKNSLEKNSVKSLSCKK....................................PKSVEQKNEKVQ.............FK-.RI.DVKTRLIDVHKISKNYIQ................................----Q.........VKGLSNNDSTYVNALLNLEMAINEYGKEYDIEDILkhfLKQFGNRYKYKVWMMmkrtdgvindydlIWEGRF....KDWYSHKYK.--KNYTT.TKEK------.--------ygerir...................
W6TFK0_9SPIR/1-187 ...............qqransyhqqtctn--------------------......----....................--------------------------...---------------------....-------.--------.......................................-------..--------.....--.....----------......NGSLKKNGSVEKWECN..NN--NNNNNK...YK....EKKEREKAQLERYINKC....................................KFKDDRYLSILN.............LET.TK.EDKIEKLIELKKEENRRK................................KEQNK.........ISKSVKKQNELEKALRQTKEELKQEGYDEKQLETE...IQKAYEKYKDKPHFI.............VESSKY....GDLGQIVKR.IKKTIKC.KKKGKKEDHR.HIRNNIFS.........................
Q9S029_BORBU/16-122 ........................qikfn--KNKLIILVKTLDHMNKELly.sanKTYN....................YVLIQNNFNEALAKTYQLRVNYKTLL...EYLEILEKNPKVILKR--PTN....KENESFIgLYTLLYPL.......................................EDCCTKI..YN------.....--.....----------......----------------..----------...--....-----------------....................................------------.............---.--.------------------................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------shpni....................
O50663_BORBU/7-104 ...........................nt--------------LLNLEL......NNYS....................QKKLLKFYNEILKKDNKNSCDLPTMN...KYLDILEKTKTIVKLSFKNQS....K---YMI.YYKINYPL.......................................KVFRSTI..QDYYQTIT.....--.....----------......----------------..----------...--....-----------------....................................------------.............---.--.------------------................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------dklklrlelnyp.............
W6TGJ5_9SPIR/2-35 .......................nvnskg--------------------......----....................--------------------------...KFLYKLEKEIQVTNNYYGNLG....VNMETEI.--------.......................................-------..--------.....--.....----------......----------------..----------...--....-----------------....................................------------.............---.--.------------------................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------.........................
Q9S027_BORBU/28-317 .............................KVQYKLIVLISTICYLNKTH......KKYT....................QKTILYYFNENLRKNGQTISTLRTMQ...KYIYRLQKEIKVTTNYYQHMG....VNSGTEI.YYKLNYPK.......................................KDCYHKI..NQHFKEKK.....ET.....RFQNRVTNYF.....nKNSDSKMGSVQCESCN..SN--KNNIKE...ER....KINEIEKYQVINYFNKC....................................NFSCKEILSILL............nLNV.DK.DTMIKIIKTIKRTDIKAK................................-NKNIy......fpKSCSKEKQEKLKKILCNTQKELEKSGYNSEQLETN...FQKIYENYKYKPHFI.............IENHKY....SDLSYIKRK.LEKSIER.KKENSKQDYK.NLRTNIFN.........................
W6THA8_9SPIR/1-119 ............................m--------------------......----....................--------------------------...---------------------....-------.--------.......................................-------..--------.....--.....----------......----------------..----------...--....-----------------....................................-----------N.............LET.TK.EIKIEKLIELKKEENRRE................................RERNK.........NNKLGDKQNELEKILGETKERLKKEVYNEKQLETE...IQKAYEKYKDKPHFI.............VESNKY....GDLRQIVKR.IKKTVEC.KKKDQKEDHR.QME-----iiyl.....................
W6TG27_9SPIR/10-307 .............................KYQHKLIVLISTLNYINSKF......KQYN....................QNKILYYFNNNLNNNGQKKATLKTLQ...SYLYKLEKEFHVTSNYYRHLG....ENCGTEI.HYKLRFSK.......................................KVCHYKI..NRHFKDKK.....ED.....RFQQRANAYHqqtctnNGSLKKNGSAEKWECI..NNNSNNKNNK...KKkkelEKKERENAQLEKYIKKC....................................KFKDDKYLSILN.............LET.TK.EIKIEKLIELKKEENRIE................................REQNK.........NKKLVDKQNELEKILEETKEGLRKEGYNEKQLETE...IQKAYEKYKDKPHFI.............VESSKY....GDLGHIVKR.IKKTVER.KQKGKKEDRK.QIRNNIFS.........................
O50682_BORBU/179-285 .......................iensff--------------------......----....................--------------------------...---------------------....-------.--------.......................................-------..--------.....--.....----------......----------------..----------...--....-----------------....................................------------.............---.--.------------------................................KRIKS........iIFNAKEPTKSLKNTLLNYKDFKNYLKYDYETKDIKeffLSKL-SLYKHKIHFM.............RKTAPY...kTDFYTLAGE.FKDTYTTkWKVNKIT---.--------sfsghariiann.............
W6TK52_9SPIR/12-299 .............................KYQHKLIVLTSTINYMNLNF......KKYT....................QSNILHYFNNNLKNNEQKEVKLKTLQ...NYLYKLEKELKVTNNYYKHLG....VNMGTEV.YYELKYFK.......................................KKCYRKI..NKYFKDKK.....NN.....RFKSRVQKEL......MQQKIKNGNVELKECN..NNIYNNKEER...KEk.leNKISIEKKQIKKYAKKC....................................NIQYNLLSSILD.............LNI.CK.NNAIEIFKAIKKDENQMK................................KNEC-.........--QIKIKQKSLNKILKEMKKQLENKGYDSKILKTE...IQKIYEKYKNKPHFI.............IENEKY....KDLDKIKNE.LERSIKR.TKTHSS---K.EIKINIF-silf.....................
W6THI6_9SPIR/12-321 ............................r-YQYNLIVLISTLNFMNLKL......KQYT....................QTNILYFFNGNLTRNKQQKVKIKTLQ...NYLYELEKKYKITLNYCKHLG....KQCGSEI.YYKLKYPK.......................................KTCHTKI..NQYFRNIK.....KEk..idKFTKRIETYI......-----QENGSPKWECI..NNINNN----...--....--KKIEERILKKYISKC....................................HFKIDLPLVLLN.............SKI.EK.DLKIELIKEIKKHERAIEalsldeinllkekliegtpncvkgflegmgylKNNES........kIQKQEIKQKELKEILDLKRKELESQNYKEDVLNQE...INKIYERYKTKPHFI.............IEQDKY....RDLDLLIQK.IKKNTE-.KCKSKTKERD.DIKNNIFS.........................
H7C7P7_BORBU/16-302 .............................KHQHKLISLTSTLDYLNKKD......KKYT....................QQNILYCFNENLKRNGLAPTTLRTMQ...NYLYKLEKVLKVTTNYYQHMG....VNCGTEI.YYKLKYPK.......................................KECYQKI..NKYFKEQK.....NS.....RFKSRVNKHF......KDNVSKNSSVNSVGCL..SN--KNNIKE...ER....KIKEIEKYQLRNYFNNC....................................NFKTEEALSILY.............LNI.DK.DTKIEAINILKQNEIALI................................KKFNI........kKSCMKEKQKKLKEILYNTRKKLEENGYNPKQLEIN...LQKVYENYKYKPHFI.............IENHKY....SDLNNIKRK.LEKSIER.KKENSQQNYQ.NLKANIFN.........................
O50752_BORBU/26-418 lnskkehcpntikvsqveslikkmrsnqy---DRLLKVYWVIDVKNQNYknscgvDRYS....................ACDIYRLVADLLKKDGKKVVSVRTVQ...RDL-KLLNEIGLIKTKLRKFGnkdnKGKGSIA.HYIQNTELvayh..............................keiiwEHLVQLL..YEKLENKKivgdfDE.....DIKNAVFNVSk....tAKFYNANNPLKDLSDT..SNGASNFSNN...FS....DKFSRHSERLSENIFLKsscdtvltnqdvdsrttmsrhsppavfnkanisysnYKNSKNSLCNSKiq........knnINFeKK.DIETKLIERNIPKDFLSR................................-----.........IKDLSNNPTTYKNALYNLDKALDEHNESNLKYVLEh.fLDQF-SIYRYKVWMMmkrrdgvisdyevIWKERF....GEFVKKKVE.LNDYVKK.----------.--------vlsmearereqrsrerlerin....
O50855_BORBU/37-144 .........................dhac----RILILTETIFEINLIL......ENYS....................QKTLLKKYNENLKNKNLPPSNISTMK...KYLKQLEKEIKIIAKFYF---....KNDQSLI.YYKLNYTL.......................................EKIWLKL.iELFYKELK.....-Q.....----------......----------------..----------...--....-----------------....................................------------.............---.--.------------------................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------fiqknttt.................
O50873_BORBU/16-303 .............................KLQHKLIVFISTLKYINSKY......KKYT....................QSNILYYFNENLKRNGQPTVKLKTMQ...NYLYKLEKEIKVTTNYHKHLG....VNFGTEI.YYKLNYPK.......................................KECYLKI..NQHFKEKK.....DI.....RFQARVNNYL......KDKFNKKGNLNLEECN..NNN-NNKEEE...EEd..iRNNKIEKCQIKKYFNKC....................................NFLSEEAKSILE.............LNI.SK.NKTIEIIKIIKKIETDLT................................KNKN-.........KVCFKKKQKMLKEILSKTKKQLEKKGYDTKQLKLK...IENIYKSYKTKPHFI.............IENKKY....KDLDKIRLK.LEKSIEI.KKESITKKYI.HIKVNIFN.........................
W6TGA7_9SPIR/17-234 .............................KYHNRYYKIVSIVKFFQKNS......IKYN....................QTSILNTLNRFLTKDELKIITLRTLR...KDL-ALLCNKGIIKKTLLRLG....EGNGSYI.RYAAN---.......................................KYSLRNL..KRFLEDKQ.....AI....vEHDANATYKF......TKETQQKYYLKNKGLN..IHKSKNAT--...--....-KNVSHNITNNKEIKKK....................................KNKKEEKKEIEK.............RTI.DT.NYMIKNVAKWKTMRYLD-................................-----.........KVKENANKKRYEDSIIRTQE---------------...---------------.............------....---------.-------.----------.--------wlkvskdnyivekn...........
Q9S081_BORBU/16-302 .............................KHQHKLISLTSTLDYLNKKD......KKYN....................QKNILYYYNENLKRNGLAPTTLRTMQ...NYLYKLEKVLKVTTNYYQHMG....VNCGTEI.YYKLKYPK.......................................KECYQKI..NKYFKERK.....NS.....RFKSRVNTHF......KDNVSKNSSVNSVECL..SN--KNNIKE...ER....KIKEIEKYQLRNYFNNC....................................NFKTEEALSILY.............LNI.DK.DTKIEAINILKQNEIALI................................KKFNI........kKSCMKEKQKKLKEILYNTRKKLEENGYNPKQLEIN...LQKVYENYKYKPHFI.............IENHKY....SDLNNIKRK.LEKSIER.KKENSQQNYQ.NLKENIFN.........................
Q9S0B5_BORBU/16-303 .............................KHQHKLISLTSTLDFLNKKD......KKYT....................QQNILYYFNENLKRNGLAPTTLRTMQ...NYLYKLEKVLKVTTNYYQHMG....VNCGTEI.YYKLKYPK.......................................KECYQKI..NKYFEERK.....NS.....RFKSRVNNHF......KDDISKNGSVNSVECL..SN--KNNIKE...ER....KIKEIEKYQVIKYFNKS....................................NLLCKEILPFLL............tLNV.DK.DTMIKIIKNIKRVENKLL................................KNTNL........nKSCFKEKQEKLKRILNNTQKEFKQNGYNPEQLKIN...LQKVYESYKFKPHFI.............IENHKY....SDLNNIKSK.LEKSIER.KKENPQQNYQ.NLKENIFN.........................
W6TJ85_9SPIR/1-86 .............................--------------------......----....................--------------------------...---------------------....-------.--------.......................................-------..--------.....--.....----------......----------------..----------...--....-----------------....................................------------.............---.--.------------------................................-----.........---MKEKQEKLSLLLENVITELKNEGYDSVALEAK...MGSIYEKYRNKPHFI.............IEEERY....GDLGVIVAN.LKKTVK-.KTENLKSQYD.DLKNNIFS.........................
Q9S024_BORBU/1-113 ............................m--------------------......----....................--------------------------...---------------------....-------.--------.......................................-------..--------.....--.....----------......----------------..----------...--....-----------------....................................------------.............---.--.---IEILKTIKRTEIKAK................................-NKNIh......ftKSCSKEKQEKLKEILCNTQKELEKSGCNSEQLETN...FQKIYENYKYKPHFI.............IENHKY....SDLSYIKRK.LEKSIEI.KKENPQKDYE.SLKINIF-h........................
W6TFI3_9SPIR/1-65 ..........................mnk--------------------......----....................--------------------------...---------------------....-------.--------.......................................-------..--------.....--.....----------......----------------..----------...--....-----------------....................................------------.............---.--.------------------................................-----.........-----------------------NKGYNNYQFKIH...IKNT-IKTQNKPHFI.............IENDQY....DNSRNIMNK.LKKSAQC.NKKNTQNNT-.--------fiilf....................
W6TWL2_9SPIR/11-304 .............................KYQHKLIVLISTLNYVNSHF......KQYN....................QNKILYYFNNNLNNNGQKKATLKTLQ...SYLYKLEKEFQVTSNYYRHLG....ENCGTEI.HYKLRFSK.......................................KVCHYKI..NRHFKDKK.....ED.....KFQQRANSYHqqtctnNGSLKKNGSAEKWECI..NNNSNNKKKN...EL....EKIERENAQLEKYIKKC....................................EFKDDKYLSILN.............LET.TK.EIKIEKLIELKKEENRRE................................REQNK.........NKKLVEKQKELEKALVETKEGLKKEGYDEKQLETE...IQKAYEKYKDKPHFI.............VESSKY....GDLGQMVKR.IKKTVER.EKKGQKEDQR.HIRNNIFS.........................
W6TGQ9_9SPIR/15-228 ...........................qy--HTRYYKVLSILKYFQRNA......INYN....................QTKILNTLNFFLKKDDIKITTLRTLR...QDLCFLCK-NGIIEKTLIRLG....KGNGSYI.RYTVN---.......................................KYSNNNL..NRLLESKQ.....SIv...eHDANAIYKFT......KKTQKKYLQNKKVKIYkpKNATKNVSHI...IN....NKKEIKNKRKNDIIFKI....................................SKVAKGKTMKYL.............DKI.EE.NKNKKRYEESILKVKNWL................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------kqsklaefanrgydnqsnkee....
O50856_BORBU/16-121 ........................qikfn--KNKLIILVKTLDHMNKELly.sanKTYN....................YVLIQNNFNEALAKTYQLRVNYKTLL...EYLEILEKNPKVILKR--PTN....KENESFIgLYTLLSPL.......................................EVCCTKI..YN------.....--.....----------......----------------..----------...--....-----------------....................................------------.............---.--.------------------................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------lhpn.....................
W6TGZ1_9SPIR/10-297 .............................KYQHKLIVLISTLNYINSTF......KQYN....................QNKILYYFNNNLSNNGQKKATLKTLQ...SYLYKLEKEFKVTSNYYRHLG....ENCGTEI.HYKLRFSK.......................................KICHYKI..NKHFRNKK.....EE.....RFQQRTNSYY......QKIYTNNGSVEKWECN..NNKNNKKKKK...EL....EKIERENTQLENYIKKC....................................KFKDDKYLSILN.............LET.TK.EIKIKKLIELKKEENRRE................................REQNK.........SKKLVEKQKELEKILGETKEGLKKEGYNEKQLETE...IQKAYKKYKDKPHFI.............VESSKY....EDLRQIVKR.MKKTVEC.KKKGQKEDHK.QIRNNIFS.........................
W6TJF7_9SPIR/29-324 .............................KYQHKLIVLISTIDYANHKY......EKYT....................QSDLLYYFNGNLKRNGQKETTIKTLQ...KYIYKLGKEFKVTNNYYQHLG....INMGTEV.YYELKYNK.......................................KECHRLI..NKNFKIKK.....EK.....RFQKRVNEHF......KSKFNKEGSVEKAESL..YNKYNRNKKE...EK....CTNQIEDFQLKKYANKC....................................NFKTSFFYNLLK.............LNL.EK.EVKIELLRKLKNAENAIErrsi........................gdikKEGDK........rCVTLKEKQEKLSLLLENVITELKNEGYDSADLEAK...MGSIYEKYRNKPHFI.............IEEERY....GDLGVIVAN.LKKTVK-.KTENLKSQYD.DLKNNIFS.........................
W6TFX5_9SPIR/3-128 .................ksekvqfkrigv--------------------......----....................--------------------------...---------------------....-------.--------.......................................-------..--------.....--.....----------......----------------..----------...--....-----------------....................................------------.............---.--.--KTRLIDVHKISRNYMQ................................----Q.........VKELSNNDSTYVNALLNLETAINEYGKEYDIEDILkhfLKQFGNRYKYKVWMMmkrtdgvindydlIWEGRF....KDWYSHKHK.--KNYTT.TKE-------.--------rygekirl.................
Q9S042_BORBU/16-303 .............................KHQHKLISLTSTLDFLNKKD......KKYT....................QQNILYCFNENLKRNGLAPTTLRTMQ...NYLYKLEKVLKVTTNYYQHMG....VNCGTEI.YYKLKYPK.......................................KECYQKI..NKYFKERK.....NS.....RFKSRVNNHF......KDNVSKNSSVNSVECL..NNK-NNNTKE...ER....KIKEIEKYQLRNYFNNC....................................NFKTEEALSILY.............LNI.DK.DTKIEAINILKQNEIALI................................KKFNI........kKSCMKEKQKKLKEILHNTRKKLEENGYNPKQLEIN...LQKVYENYKYKPHFI.............IENHKY....SDLNNIKRK.LEKSIER.KKENSQQNYQ.NLKENIFN.........................
Q9S067_BORBU/16-302 .............................KHQHKLISLTSTLDYLNKKD......KKYT....................QQNILYYFNENLKRNGLAPTTLRTMQ...NYLYKLEKVLKVTTNYYQHLG....VNCGTEI.YYKLKYPK.......................................KECYQKI..NKYFKERK.....NS.....RFKSRVNKHL......KDNVSKNGSVNSVECL..SN--KNNIKE...ER....KIKEIEKYQLRNYFNNC....................................NFKTEEALSILY.............LNI.DK.DTKIEAINILKQNEIALI................................KKFNI........kKSCMKEKQKKLKEILYNTRKKLEENGYNPKQLEIN...LQKVYENYKYKPHFI.............IENHKY....SDLNNIKRK.LEKSIKR.KKENSQQNYQ.NLKENIFN.........................
Q9S020_BORBU/14-124 .........................dhac----RILILTATIFEINSIF......ENYY....................QKTLLKKYNENLKNKNLPPSNISTMK...KYLNQLEKEIKIIAKFYF---....KNDQSLI.YCKLNYTL......................................eKICLKLI..KFYKKFYK.....EL....kQF--------......----------------..----------...--....-----------------....................................------------.............---.--.------------------................................-----.........-----------------------------------...---------------.............------....---------.-------.----------.--------tqknitt..................
O51031_BORBU/10-306 .............................KYQHKLIILISTLNYVNSNL......EQYT....................QNDILYYFNNNIRRNCQKEVKLKTLQ...NYLYKLEKVFKVTSNYHRHLG....INMGTEV.HYKLKYPK.......................................KVCYHLI..NKHFKEIK.....KK.....KYKSRVDSYF......NKNCIENSSVKNRECF..YNISNNKEEK...RN....SRKSIEKLQIRKYIEKC....................................NFKSNIFSLILN.............LGL.KK.DATIEVCKMIKKAENLIE................................KNIFEklnvvkvieVNKLKNKQQKLKRILKEVKIKLENENYKSEQLEIE...IKDIYEQYKNKPHFI.............IEKNKY....EDLEKITEK.LKNKFKQ.EKINIKENDT.NIRNNIFN.........................
W6TFM2_9SPIR/13-351 ...........................kr--YKRIIKVYWAINTKNKNYkqsmgiEEYS....................ACDIQKIVLKLLENDAAKKVCKRTLEldiK----LLNNLNLIKSKIIRFG....KGKGSVA.YYVQNMELmpthkdailehliqimqdnlkdkiiiknfaldepfdnepKNINSKT..TKFITEKI.....EE.....KNNEQLH---......KNRMGIISHVQAPDVI..NKANISNINK...KN....SKNSLEKNSAKSLSSEK....................................QKNVEQKSEKVQ.............FK-.RI.GVKTRLIDVHKISRNYMQ................................----Q.........VKELSNNDSTYVNALLNLETAINEYGKEYDIEDILkhfLKQFGNRYKYKVWMMmkrkdgvindydfIWEGRF....KDWYSNKYK.--KNYTM.KKEKYGE---.--------kirlasknfdfn.............
Q9S0H4_BORBU/16-303 .............................KHQHKLIYLTSTVDFLNKKD......KKYT....................QQNILYYYNKNLKRNGLAPTTLRTMQ...NYLYKLEKVLKVTTNYYQHMG....VNCGTEI.YYKLKYPK.......................................KECYQKI..NKYFKERK.....NS.....RFKSRVNNHF......KDNVSKNSSVNSVECL..SN--KNNIKE...ER....KIKEIEKYQVIKYFNKS....................................NFLCKEILPFLL............tLNV.DK.DTMIKIIKNTKRVENKLL................................KNTNL........nKSCFKEKQEKLKKILNNTQKEFEQNGYNPEQLKTN...LQKVYENYKFKPHFI.............IERHKY....SDLNNIKRK.LEKSIER.EKQNSQQNYQ.NLKENIFN.........................
#=GC seq_cons ...............................pp+llhlhpslpahNpph......cpYs....................QpsILhhhNp.Lp+ss.t.ssl+Thp...paL.tLpK.hplhpshh.+hG....hspGo.l.aYplph.h.......................................c.shppl..pphhcp+p.....t......chppth..........ptt.tp.t.hpp.ph....p...p.............phtphpp.ph.p.h.pt........................................p....h................ph.pp.p.hhchht.hK..c....................................................p..ppppph.phL.phpp.hpp.thp.t..ch....hpph.ppY+.K.ahh.............h.pt+a....tDh..hh.c...pphp..pppt........................................
//
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