GenomeNet

Database: Pfam
Entry: Prok-E2_C
LinkDB: Prok-E2_C
Original site: Prok-E2_C 
#=GF ID   Prok-E2_C
#=GF AC   PF14459.10
#=GF DE   Prokaryotic E2 family C
#=GF AU   Iyer LM;0000-0002-4844-2022
#=GF AU   Burroughs AM;0000-0002-2229-8771
#=GF AU   Aravind L;0000-0003-0771-253X
#=GF SE   Manual
#=GF GA   25.00 25.00;
#=GF TC   43.80 63.90;
#=GF NC   24.70 18.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 --cpu 4 -E 1000 HMM pfamseq
#=GF TP   Family
#=GF CL   CL0208
#=GF RN   [1]
#=GF RM   16859499
#=GF RT   The prokaryotic antecedents of the ubiquitin-signaling system
#=GF RT   and the early evolution of ubiquitin-like beta-grasp domains. 
#=GF RA   Iyer LM, Burroughs AM, Aravind L; 
#=GF RL   Genome Biol. 2006;7:R60.
#=GF RN   [2]
#=GF RM   18276160
#=GF RT   Anatomy of the E2 ligase fold: implications for enzymology and
#=GF RT   evolution of ubiquitin/Ub-like protein conjugation.
#=GF RA   Burroughs AM, Jaffee M, Iyer LM, Aravind L;
#=GF RL   J Struct Biol. 2008;162:205-218.
#=GF DR   INTERPRO; IPR032864;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   A divergent member of the E2/UBC superfamily of proteins found
#=GF CC   in  bacteria. Members of the family contain a conserved cysteine
#=GF CC   in place of the histidine of the classical E2/UBC proteins
#=GF CC   [1,2]. Members of this family are usually fused to an E1 domain
#=GF CC   at their C-terminus. The protein is usually in the gene
#=GF CC   neighborhood of a gene encoding a JAB peptidase and another
#=GF CC   encoding a predicted metal binding domain [1].
#=GF SQ   18
#=GS A0A514WR74_9SPHN/38-164  AC A0A514WR74.1
#=GS A0A5N1IXH6_9BACT/39-168  AC A0A5N1IXH6.1
#=GS A0A139BPG1_9PROT/38-167  AC A0A139BPG1.1
#=GS A0A1M5BCD9_9BACT/38-168  AC A0A1M5BCD9.1
#=GS A0A271K9S4_9HYPH/38-166  AC A0A271K9S4.1
#=GS A0A7W9HFE7_9PSEU/38-161  AC A0A7W9HFE7.1
#=GS K0Q6L2_9HYPH/38-166      AC K0Q6L2.1
#=GS A0A5C4N8M1_9RHOB/38-165  AC A0A5C4N8M1.1
#=GS A0A439EZK8_9BURK/42-163  AC A0A439EZK8.1
#=GS Q2K2A4_RHIEC/38-166      AC Q2K2A4.1
#=GS A0A1B9YGK7_9BRAD/38-166  AC A0A1B9YGK7.1
#=GS A0A495XJ46_9PSEU/38-161  AC A0A495XJ46.1
#=GS A0A2A3CA69_9HYPH/38-166  AC A0A2A3CA69.1
#=GS A0A6G8QEI2_9ACTN/38-166  AC A0A6G8QEI2.1
#=GS Y4JF_SINFN/38-166        AC P55506.1
#=GS A0A102DAR0_9SPHN/38-165  AC A0A102DAR0.1
#=GS A0A7R7CPH2_9HYPH/38-166  AC A0A7R7CPH2.1
#=GS K0PU64_9HYPH/38-166      AC K0PU64.1
A0A514WR74_9SPHN/38-164             ......AFDTHAATCLEGVAALDLSTRLIARLYPRVRVLSLGGD-..HA..HADELIVLLRAINPNVEIVDLPVG.E.DIVVVAGVTE.A.P-A..GR...VIYMGSDRWIARVGTARPLGFGTSTNPFGAGAAACIAVANVFRAVF-t
A0A5N1IXH6_9BACT/39-168             ygsncl-------KTSEGRAGLDLAVRIFSRLYPKITFLNLAKKT..YSltYTEQLKSLATEINPEIDC--SDKQ.ApTIYLVVGKVS.NfTAA..QP...CIYIGSNNWNAYFSTAVAQTCKDTNNPFGIGSAICFGAANIFRCIF-k
A0A139BPG1_9PROT/38-167             ......AFDSHA-LTLEGMSALDLAIRLIARFYPKIAIVPLDHEC..ED..AAMTLQAIAKFINPKIAITSRFGG.A.TDVIVVGETV.P.ADTgdAF...KYFIGSDGWIARFSRSNPVGSGKSDNALGAGVAACLGASNIFRRIF-s
A0A1M5BCD9_9BACT/38-168             ....vy--SDNAVQTNEGKFALDLAVRILARLYPNIQFVDHSSDGygST..ITKELKATSFRINPVLNVNEV-EA.P.DITLVIGSVDdR.QVG..GQ...CFFTGSSGWKATFSTQSSMNCADTQNPFGAAASVCIAAANIFRFLFA.
A0A271K9S4_9HYPH/38-166             ......AFDHQAASCAEGQATLDLAVRLLARLYPVLAILPLDSAA..SS..QAQALERLAKSINPKVGIRRSGKS.A.TVCVVAGVTR.P.SLR..CP...IFFVGSDGWAAKLSRTDPVGSGPSLLPYGAGAASCFGAANVFRTIFA.
A0A7W9HFE7_9PSEU/38-161             ....al--GRDAAETREGRALADLAVRLLARLYPTVAFLS-GPGA..EA..LSTELSTLARAVNPNITIT---DH.A.TLGIAIGLDA.P.TFE..-R...TFHAGSDAWTALLSCRTPQPVGDSAIPFGAGAAACFAAAAVFRTVL-i
K0Q6L2_9HYPH/38-166                 ......AFDEQAASCAEGQATLDLAVRLLARLYPVLAIVPLDSSA..NS..QAKALERLAKSINPKVGIRRSGKS.A.TVCLVAGTTR.P.SLQ..CT...TFFMGSDGWTAKLSRHDPVGSGSSLLPYGAGAASCFGAANVFRTIFA.
A0A5C4N8M1_9RHOB/38-165             ......AFDGLAAGAAEGRAGLDLAVRLLARLYPTIRLTPLDKGA..EA..LAGELITLALSINHDLETAPAGES.-.TVRLIFGGSP.A.REG..PP...TIYGGSEGWLAKVSTRGPVGVGGTALPFGAGAAACLGAANVFRSIFA.
A0A439EZK8_9BURK/42-163             .evkkp----------EGRAIADLIVRLLARLYPRLTLHSTAG-T..VP..VVREMQDLATRINPRIEF---GGT.P.TVEIIIGTP-.P.RLK..ASsikRIFVGSNGWEAHVSTKGPLSCGLTDIPFGPGLAACLAAANVFRSVF-v
Q2K2A4_RHIEC/38-166                 ......AFDEQAC-ATEGRASLDLLVRLVARLYPTICLLPSGEEA..KK..LAKNLASLARSINEDITIARRGSS.AlSHCLVVGSTN.P.EIS..CP...KFFLGSDGWIAKFSPEEPVGTAGSNNAFGAGAAACIAASNLFRHIF-r
A0A1B9YGK7_9BRAD/38-166             .....s-FDGAAVQSWEGRASLDMIIRLLSRLYPTIALRPLDEKA..KD..HVPILEFLAKSINPEIELAKTRKA.V.TVSVVVGSSP.S.RIK..CP...TFFIGSDEWRAKLSSRVPVGSGKSMNPFGAGATACFAAANVFRTVFA.
A0A495XJ46_9PSEU/38-161             ....al--GRDAANTREGRALADLTVRLLARLYPTLALVSG-PGA..EA..LCTELSTLARAVNPKITIT---DH.A.AVGIAIGLDA.P.AFE..-R...TFHAGSDAWTALLSSRAPQPVGDSAIPFGAGAAACFAAAAIFRSVL-m
A0A2A3CA69_9HYPH/38-166             ......AFDNQAASCAEGAATLDLAVRLLARLYPVLAILPLDSAA..SC..QTQALERLAKSINPKVGIRRSGKS.A.TVCVVAGVTR.P.SLR..CP...TFFMGSDGWSAKLSLTDPVGSGSSLLPYGAGAAGCFGAANVFRTIFA.
A0A6G8QEI2_9ACTN/38-166             .....t-FDDAATGSPEGRITLELAVNLLSRLYPRLAVVPSGGET..EG..LAEDLVSLARSINPKIDIESGLEG.A.DICLSVGSTP.A.TGT..TP...VVYLGSDGWVAQISTKDPQGSGPTENPFGAAAAACLGAANAFRAVF-s
Y4JF_SINFN/38-166                   ......AFDDQAASCAEGQATLDLAVRLLARLYPVLAILPLDSAS..SF..QAQALERLAKSINPKIGIRRSGKS.A.MVCLVAGATR.P.SLR..CT...TFFIGSDGWAAKLSRTDPVGSGSSLLPYGAGAASCFGAANVFRTIFA.
A0A102DAR0_9SPHN/38-165             ......AFDATGEESIEGQCALDMAARLVARLYPRVAIVPLSGTG..E-..LSGQLADLMRSINPEIEIFAEGDArH.GVALVVGTTA.F.NAD..-T...LIYIGSDRWVASVSTTAPRGSGNSNNPLGAGAAACIGTANVFRAVFA.
A0A7R7CPH2_9HYPH/38-166             ......AFDDQAASCAEGQATLDLAVRLLARLYPVLAILPLGSAA..SF..QAQALERLAKSINPKVGIRRSGKS.A.TICVVAGVTR.P.PLR..CP...TFFMGSDGWAAKLSRTDPVGSGSSLLPYGAGAASCFGAANVFRTIFA.
K0PU64_9HYPH/38-166                 ......AFDDQAASCAEGQATLDLAVRLLARLYPVLAILPLASAA..SS..QAQALERLAKSINPKVGIRRSGKF.A.TVCLVAGATS.P.SLR..CP...TFFIGSDGWAAKLSRTSPVGSGSSLLPFGAGVASCFGAANVFRTIFA.
#=GC seq_cons                       ......AFDspAspssEGpAsLDLAVRLLARLYPslAllPLsusu..ps..huppLpsLA+SINPclsIppsscu.A.TlslVsGsTs.P.shp..ss...sFFhGSDGWsA+lSspsPlGoGsSt.PFGAGAAuChGAANVFRolF..
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