KEGG   Pseudomonas fluorescens A506: PflA506_0978
Entry
PflA506_0978      CDS       T02114                                 
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
pfc  Pseudomonas fluorescens A506
Pathway
pfc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PflA506_0978 (rhlB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfc03019]
    PflA506_0978 (rhlB)
Enzymes [BR:pfc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PflA506_0978 (rhlB)
Messenger RNA biogenesis [BR:pfc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PflA506_0978 (rhlB)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25
Other DBs
NCBI-ProteinID: AFJ56957
Position
complement(1111085..1112551)
AA seq 488 aa
MTVLKALKKMFGKSEAEPLAPVPSAPAPKPGNRNDGQQPGRNAPAASPSKTTVTPPEQVK
PAEPAPTPVAKPRRERAPKPPVTPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFP
YCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALII
APTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFN
QRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKAERQTLLFSATFTEDVMNLA
KQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDEV
RRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVI
NFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIEALLGRKISCETPPTHLL
RAVERKRP
NT seq 1467 nt   +upstreamnt  +downstreamnt
atgaccgtgctcaaagcactcaagaagatgttcggcaaaagcgaggctgagccgctcgcg
cctgttcccagtgctcctgcccccaagcccggcaaccgcaatgacggtcaacagcccggc
cggaacgcacccgccgcctcaccgagcaaaaccacggtgacgccgcctgaacaggtaaag
cctgccgagcccgccccgacgcctgtggccaagccccgtcgcgaacgtgcgcccaagccg
cccgtgaccccctggaaactcgaagacttcgtcgtcgaaccccaggaaggcaagacccgc
ttccacgatttcaaactggccccggaactgatgcacgccatccaggacctgggtttcccg
tactgcacgcccatccaggcgcaagtgctgggcttcaccctcgcgggcaaagacgccatc
ggccgcgcccagaccggcaccggcaagaccgccgcgttcctgatctcgatcatcacccaa
ttgctgcaaacgccgccgcccaaagagcgctacatgggtgaaccgcgtgcgctgatcatc
gccccgacccgggagctggtggtgcagatcgccaaggacgccgccgacctgaccaagtac
accggcctcaacgtcatgacgttcgtgggcggcatggacttcgacaagcagctcaagcac
cttgaggcccgtcattgcgacatcctcgtcgccaccccgggccgcctgctcgacttcaac
cagcgtggcgacgtgcacctggacatggtcgaagtgatggtactggacgaagccgaccgc
atgctcgacatgggctttatcccgcaagtacgccagatcattcgtcagacgccgccgaaa
gccgagcgtcagactttgctgttctccgcgactttcaccgaagacgtgatgaacctcgcc
aagcagtggaccaccgacccatccatcgtcgagatcgaagcactcaacgttgccagcgaa
aacgtcgagcagcatatctacgccgtcgccggtgccgacaagtacaagctgctctacaac
ctggtcaacgacaacggttgggaacgcgtgatggtcttcgccaaccgcaaggacgaagtg
cgccgcattgaagagcgcctggtgcgcgacggcgtcaacgctgcgcaactgtcgggtgat
gtgccgcagcacaagcgcatcaagaccctggaaggcttccgtgaaggcaagatccgcgtg
ctggtggctaccgatgtagccggtcgcggtattcatatcgacggcatcagccacgtgatc
aacttcaccctgccggaagtgccggacgactatgtgcaccgcattggccgtaccggacgt
gccggggcagcgggtgtgtcgatcagctttgcaggggaagatgactcgtaccagctgccg
tccatcgaggcgttgctggggcgcaagatcagctgtgagacgccgccgacgcacttgctg
cgggctgtagaacgcaaacgcccctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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