KEGG   Pseudomonas fluorescens UK4: HZ99_20135
Entry
HZ99_20135        CDS       T03319                                 
Name
(GenBank) primosomal protein N'
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
pfn  Pseudomonas fluorescens UK4
Pathway
pfn03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pfn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    HZ99_20135
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfn03400]
    HZ99_20135
Enzymes [BR:pfn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HZ99_20135
DNA repair and recombination proteins [BR:pfn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     HZ99_20135
SSDB
Motif
Pfam: PriA_3primeBD PriA_C DEAD ResIII Helicase_C PriA_CRR AAA_30 HypA PIF1 zinc-ribbons_6 AAA_16 TrwB_AAD_bind zinc_ribbon_15 AAA_19 AAA_22 ADDB_N RUBY_RBDX
Other DBs
NCBI-ProteinID: AIG04378
Position
complement(4403736..4405955)
AA seq 739 aa
MPDAILRLALPSPLRRLFDYRAPAGVVRSQLQPGMRVRVPFGRREMIGILIEVADHSEVP
PEKLKPALAILDATPPLPASLFKLCLWTSQYYQHSLGDTLSWALPVLLRQGELAETRQER
FWSITPGARLDDPRIARAPRQREVLATLAQHPHGVAHPLLSKLMLSKDSLDLLLAKDLVQ
VEIRRHAPGERHEHWLAQPELPLNPEQRAAFEAISASADSFHAFLLAGVTGSGKTEVYLQ
LIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALVHSAVNDRERLESWLAARDGE
ADIIIGTRSALFTPMKNPGLIIIDEEHDGSYKQQEGLRYHARDLALVRARQENIPIVLGS
ATPSLESLHNAYTGRYGLLRLNERAGGAKQPRFLRLDVKSRPLDSGISGPMQQAIGQTLA
AGQQVLVFLNRRGFAPTLLCHDCGWMSECNRCDARMTVHQRSAELRCHHCGHVERVPRHC
PQCGKVDLRPVGAGTERAEERLGILFPDFPVLRVDRDSTSRKDAMNQLFATIQKGQPCIL
VGTQMLAKGHHFPRVTLVSILDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGRVII
QTHLADHPLLIQLTEQGYFAFAEQALSERRAAGLPPFAHLALLRAEAHKPGQAEGFLDEA
CSVAERLLGELGLSGIELLGPVPAPMERRAGRYRAQLLLQATARAPLHRLLSSWLLALEQ
MPSGRQVRWSLDVDPVDLY
NT seq 2220 nt   +upstreamnt  +downstreamnt
gtgcccgacgccattttgcgcctcgccctgccctcgcccctgcgccgcctgttcgactat
cgggcacccgcgggcgtggtgcggtcgcagttgcagccggggatgcgcgtacgcgtgccg
ttcggccgacgggagatgatcgggatcctgatcgaagtggcggatcatagcgaagtgcca
ccagaaaagctcaagccggccctggccatcctggacgccacgccgccgctgccggcgtcg
ctgttcaagctgtgcctgtggacttcccagtattaccagcacagcctgggcgatacgttg
agctgggcattgccggtgctgttgcgccagggcgagctggccgagacccgccaggagcgc
ttctggtcgataacgcccggtgcacgcctggacgacccacgtatcgcccgcgccccacgc
cagcgcgaggtcctggccacactggcgcagcacccccatggcgttgctcacccactgctg
agcaaactgatgttgagcaaggacagcctcgacctgctgctggccaaggacctggtgcag
gtggaaatccgccgccacgcccccggcgagcgccatgaacactggctggcccaaccggag
ctgccgctgaacccggaacagcgcgccgcgttcgaggccatcagcgccagcgccgacagc
ttccacgcattcctgctggccggcgtcaccggcagcggcaagaccgaagtctatttgcaa
ttgatccgcgaaaccctggaagccggcaagcaggccctggtgctgatccccgagattaac
ctcggcccccagaccctggcgcgcttcgaacaacgcttcaatgcgcggatcgccctggtg
cattcggccgtcaatgaccgcgagcgcctggaatcctggctggccgcccgggacggcgag
gccgacattattatcggtacccgctcggccctgttcacgccgatgaaaaaccccggcctg
atcatcatcgacgaagaacacgacggctcctacaaacagcaggaaggcctgcgctaccac
gcccgcgacctggccctggtgcgcgcacgccaggaaaacattccgattgtgctgggctcg
gccacgccctccctggaaagcctgcataacgcgtacaccggacgctacggcctgctgcgc
ctgaacgaacgggcgggcggggccaaacaaccgcgcttcctgcgcctggatgtaaaaagt
cgcccactcgacagcggcatttccgggccgatgcaacaggccatcggccagaccctggcg
gccggccagcaagtgctggtgttcctcaatcgccggggctttgcgccgacactgctgtgc
cacgactgtggctggatgtccgagtgcaaccgctgcgatgcgcggatgaccgtgcaccag
cgctccgccgaattgcgctgccatcactgcggccatgtggagcgggtcccgcgtcattgc
ccgcagtgcggcaaagtcgacctgcggccagtaggcgcgggcaccgaacgcgccgaggag
cgcctggggattctgttcccggacttcccggtactgcgcgtagaccgcgacagtacgtcg
cgcaaggacgccatgaaccaactgttcgccaccatccagaaaggccagccgtgcattttg
gtaggcacgcaaatgcttgccaaagggcaccactttccacgtgtgaccctggtctcgatc
ctggatgccgacggcgggctgttctccggcgactttcgcgccagcgaacgcatggcgcag
ttgatcgtgcaggttgctggccgcgccgggcgtgccgaggagcctggccgagtgatcatc
cagacccacctggccgaccatccattgctgattcaactgacagaacaaggctattttgcc
ttcgccgaacaggccttgagcgaacgtcgcgcagccggcctgccaccctttgcgcacctg
gcgctgttgcgcgccgaggcccataaaccggggcaggccgaaggttttctggatgaggcc
tgcagcgtggctgaacgtttgctcggtgaactgggtctgagcggcatcgagttgctgggc
ccggtgccagcaccgatggaacgccgcgccggacgttatcgcgcgcagctactcttgcaa
gccaccgctcgtgcaccgctgcatcggctattaagtagctggttacttgctctggagcaa
atgcccagcggacggcaggtgcgatggtcgttggatgtcgatccggtcgatttgtactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (17)   
   Pfam (17)   
All databases (26)   

Download RDF
DBGET integrated database retrieval system