KEGG   Pseudozyma flocculosa: PFL1_06296
Entry
PFL1_06296        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PFL1_06296
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfp03019]
    PFL1_06296
Enzymes [BR:pfp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     PFL1_06296
Messenger RNA biogenesis [BR:pfp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     PFL1_06296
  mRNA degradation factors
   3'-5' decay
    Ski complex
     PFL1_06296
SSDB
Motif
Pfam: DSHCT Ski2_N DEAD MTR4_beta-barrel MTR4-like_stalk ResIII Helicase_C DUF3516 AAA_22
Other DBs
NCBI-GeneID: 19320374
NCBI-ProteinID: XP_007882028
UniProt: A0A061H1D0
Position
Unknown
AA seq 1198 aa
MEQPLFAHTGAYNDAVAALRRPGAADPVDPASLLSRDATTTIVDRFLAPLSRFTPSDLAR
QQVHWPRTPHTQSMLWAEPSVSLTSLDFVRAGLEGRIVGYKELSHPRDPLLDPRNSTSLA
RKPATATNFVRGKSAFVPFAPGGLEDEVIAPHDPQEADERIETEVQQMEDALRSGRGLRD
HAPGLSRPYEDPEASAADDGDDDDDVEIGEVDAITGMTPLPIYRPSNEAGPSRLSSALSS
SSSQQQQPGAHGSSAAGREQDAELDELLPMERPRPLLQKRAAKVDAKRDWAHVVDVNQSL
TNFKELVPEMAHSFPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIALAQKHM
TRCIYTSPIKALSNQKYRDFKQTFGAQNVGILTGDVQINPEAPCLIMTTEILRSMLYRGA
DLIRDVEFVIFDEVHYVNDTERGVVWEEVIILCPQHINMILLSATVPNTKEFADWVGRTK
KKDIYVISTPKRPVPLEHFLYAGKEIFKIVDAQAQFLGGGLKDAGEALKRKQEKEREAAG
LPPPDLLPCVVFVFSKKRCEENAGSMPNTDLCNAREKNEVFIVIEKSLTRLKGSDKELPQ
IKRMRDLLGRGIGVHHGGLLPIVKEIVEILFQRGLVKVLFATETFAMGVNMPARSVVFSG
IRKHDGQGFRDLLAGEYTQMSGRAGRRGLDPTGVVIINASDGLPESATLHKMLLGQPTKL
QSQFRLTYNMILNLLRVETLKVEEMIKRSFSENAAQKMLPDQQRKAEEVERKLSKLPQVQ
PKELAEELSVYYDLCNAIDSSHQGMCELALDNPQGSKNFAAGRVVLLRDSHFDHHVGVIV
RQVASREFLVLAAVSKETKRGESDSVGTVAPLWPPRVERCEAEETVYDLREVPLSSIIDV
PLIMAHRISAMTKAVEALLPLRDAYAALDTGAVPPEVDWSKIRRLDFQEALRSRDSYVGR
LKPHFGLVDDDAFLKHYAQTHTRKQLEAELSQLLLKQSNQNLELLPDYHQRIEVLKALRF
IEPTSESVLLKGRVACEINSANELVLTELILENALVRYTPEETVALLSIFLFQEKTSVVP
ELSERLSEGYATIVEIADRVNAVQALNQLNFEDFANPQKLGLVQVVYEWARGTAFDKITD
LTDVQEGTIVRVITRLDETCREVRDAARVIGDADLFTKMETCQALIRRDIVFAASLYF
NT seq 3597 nt   +upstreamnt  +downstreamnt
atggagcagcccctgtttgcccacacgggcgcatacaacgatgccgtcgccgcgctccga
cgcccgggtgcagccgaccccgtcgacccggccagcctgctcagccgcgatgccaccacc
accatcgtcgaccgcttcctcgcccccctcagccgcttcacgccctcggacctcgccagg
cagcaggtccactggccacgcacaccccacacccagtccatgctctgggccgaaccctcc
gtcagcctcacctcgctcgactttgtccgcgcaggcctcgagggccgcatcgtcggctac
aaggagctatcccacccgcgcgaccccctcctcgacccgagaaactcgacctcgctcgcc
cgcaagcccgccaccgccaccaactttgtcaggggaaagagcgccttcgtcccctttgcc
ccgggcggtctcgaggatgaggtcatcgcaccccacgacccgcaagaggcagacgagcgc
atcgagacagaggtgcagcagatggaggacgccctgcgctcggggagggggttgcgcgac
cacgccccaggcctcagccgcccctacgaggaccccgaggcgtcggcggccgacgatggc
gacgacgacgacgacgtcgagatcggcgaggtcgatgccatcaccggcatgacacccctt
cccatttaccgcccgtccaacgaggccggaccgtctcgcctctcgtccgcactctcgtcg
tcgtcgtcgcagcagcagcagcctggtgcgcacggctcgtccgctgctggccgcgagcag
gacgccgagctcgatgagctgctgcccatggaacgcccgcgccccctcctccagaagcgc
gccgcaaaggtcgacgccaagcgcgactgggcccacgtcgtcgacgtcaaccagtcgctc
accaacttcaaggagctcgtccccgaaatggcccactcgttcccctttgagcttgacacg
ttccagaaggaggccgtctaccacctcgagcagggcgacagcgtctttgtcgccgcccac
acctcggcaggaaagacggtcgtggccgagtacgccatcgcgctggcgcagaagcacatg
acgcgctgcatctacacctcgcccatcaaggcgctctcgaaccaaaagtaccgcgacttt
aagcagacgtttggcgcgcagaacgtcggcatcctcacgggcgacgtccagatcaacccc
gaggcgccgtgcctgatcatgacgaccgagatcctgcgcagcatgctctaccgcggcgcc
gacctcatccgcgacgtcgaattcgtcatcttcgacgaggtgcactacgtcaacgacacc
gagcgcggcgtcgtgtgggaggaggtcatcatcctctgcccgcagcacatcaacatgatc
ctcctctcggccaccgtgcccaacaccaaggagttcgccgactgggtcgggcgcaccaag
aaaaaggacatctacgtcatcagcacgcccaagcgccccgtcccgctcgagcacttcctg
tacgccggaaaggagattttcaagatcgtcgatgcccaggcccagttcctcggtggcggc
ctcaaggacgccggagaggcgctcaagcgcaagcaggaaaaggagagggaggccgcgggc
cttccgccgcccgatctcctgccctgcgtcgtctttgtcttttccaaaaagagatgcgag
gagaacgccggcagcatgcccaacaccgacctctgcaacgccagggagaaaaacgaggtc
tttatcgtcatcgaaaagagcctcaccaggctcaaaggatcagacaaggagcttcctcag
atcaagaggatgcgggacctgctgggcagaggcatcggcgtgcaccacggaggcctgctg
ccgatcgtcaaagagatcgtcgagatcctcttccagcgcggactcgtcaaggtcctcttc
gcgacagagacgttcgccatgggcgtcaatatgcccgctcggtccgtcgtattctcgggg
atccgcaagcacgacggccaagggttcagggatctgctggccggcgagtacacccaaatg
tcgggtcgagccggacgacgaggtctcgacccgaccggggtggtcatcatcaacgcatct
gacgggcttcccgagagcgcgacgctgcacaagatgctgctggggcagccgaccaagctg
cagtcgcagttccgcctgacgtacaacatgatcctcaacctgctgcgcgtcgagacgctc
aaggtcgaagagatgatcaagcgctccttttccgaaaacgccgcacagaagatgctgccc
gaccagcagagaaaggccgaagaggtggagaggaagctgtcgaagctgccgcaggtgcag
ccaaaggagctggccgaggagctgagcgtctactacgacctgtgcaacgccatcgacagc
tcgcaccagggcatgtgcgagctcgccctcgacaacccgcagggaagcaagaactttgcc
gccggccgcgtcgtgctgttgcgagacagtcactttgaccaccacgtcggcgtcatcgtg
cgccaggtggcgtcgcgcgagttcctcgtcctcgccgccgtgtccaaggagacgaagcgg
ggcgaatccgattccgtcggcacggttgcgccgctctggccgccccgcgtcgagcgttgc
gaggccgaggagacggtctacgacctgcgcgaggtgccgctgtcgagcatcattgacgtg
ccgctgattatggcgcaccgcatctcggccatgaccaaggccgtcgaggcgctgctgccc
ctgcgcgacgcctacgccgccctcgacacgggcgcggtgccgcccgaagtcgactggtcc
aagatccggcgtctcgacttccaggaggcgctgcggtcgcgcgacagctacgtcggtcgg
ctgaagccccactttggactcgtcgacgacgatgcgttcctcaagcattatgcgcagacg
cacacgcgcaagcagctcgaggcggagctgagccagctgctgctcaagcagtcgaaccag
aacctcgagctgctgccagactaccaccagcgcatcgaggtgctcaaggcgctgcgcttc
atcgagcccacgtccgagagcgtgctgctcaaggggcgcgtggcgtgcgaaatcaactcg
gcaaacgagctcgtcctcaccgaactcatcctcgaaaacgccctggtccgctacacaccc
gaggaaaccgtggcgctcctcagcatcttcctgtttcaggaaaagacgtcggtcgtcccc
gaactgtccgagaggttgtcagagggctacgcaaccattgtcgaaatcgccgaccgagtc
aatgcagtgcaggcgctcaaccagctcaactttgaagatttcgccaacccgcagaaactc
ggactggtccaagtcgtctacgaatgggcgcgtggaaccgcatttgacaagatcacggac
ctcaccgacgtccaggaaggcaccattgtgcgcgtcattacccggctcgacgagacgtgc
agagaggtgcgcgacgccgcgcgcgtcattggcgacgccgacctcttcaccaagatggaa
acctgccaggccctcattcgtcgcgacatcgtctttgccgcaagcctctacttctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (21)   

Download RDF
DBGET integrated database retrieval system