KEGG   Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1: PFREUD_05610
Entry
PFREUD_05610      CDS       T01252                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit)
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pfr  Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Pathway
pfr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pfr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PFREUD_05610 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfr03021]
    PFREUD_05610 (rpoC)
   03400 DNA repair and recombination proteins [BR:pfr03400]
    PFREUD_05610 (rpoC)
Enzymes [BR:pfr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PFREUD_05610 (rpoC)
Transcription machinery [BR:pfr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PFREUD_05610 (rpoC)
DNA repair and recombination proteins [BR:pfr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PFREUD_05610 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: CBL56090
UniProt: D7GJ18
Position
659795..663685
AA seq 1296 aa
MLDVNTYDTLKIGLATADQIRGWSYGEVKKPETINYRTLKPERDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSNVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAYMITRVDEDARSRDLSSLEAKVATEHKHIEGRRDADVEKRMSKLEED
LAKLEEEGAKADAKRKVKDGGEKELKTIRDRAQRELDRLDAVWDRFKGLKVQDLEGDEVL
YREMKNRFGKYFDGFMGAEAVKRRLETFDLAAEADSLRETILTGKGQRKTRALKRLKVVS
AFLDTGNSPMGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKMHQCGLPKQMALELFKPFVMKRLDDLNYAPNIKSAKRMVDRQR
PQVFDVLDEVIREHPVLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGKPIALPSHEMIIGMYYLTQDLDGLTGEGR
AFSSKAEAVMAYDLHQLDLRAKCKIRLSGVVPPVGLEDKQRADGSLLLDTTLGQVIFNEA
LPDNYPYVTSHVGKKQLSAIINDLAIRFPRPVVVATLDNLKDMGFRWGTQSGVTVSIGDV
QTPPNKPEIMASYEKKAAKIDKLYDRGAVTEEERRGELVQIWNDATAELTDAMEKNFTKT
NPIYMMVNSGARGNMTQMRQIAAMRGLVANPKGEIIERPIKSNFREGLTVLEYFISTHGG
RKGQADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLMKAIAEPGADGMLVPAKML
DTSVHGRILATDATDESGKVVIEAGTMLDSTVVGNAIRAGITSIKVRSVLTCEATTGACA
KCYGLSLANGKMVEVGEAVGIQAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVVELF
EARTPKGKAPIAEADGRVKIEETDRGRKLTIVRDDGGEDVEYALPRRARLEFEDSNRVRH
SIADGVHVGVGEQLTGGTIDPQDVLRVRGLRKVQEHLVEEVQKVYASQGSPIHDKHIEIV
IRQMLRRVTVIESGDTPMMPGELVDRKTYEAANRKAVEEGGRPAEGRPVLMGITKASLAT
ESWLSAASFQETTKVLTDASIHGKSDHLVGLKENVILGKLIPVGTGLERYRDIRVEPTAE
AKANSFQVNYDPFDYDFGSGSGAAVPLDDLDFGDLR
NT seq 3891 nt   +upstreamnt  +downstreamnt
gtgctggacgtcaacacatacgacacactcaagatcggcctcgccaccgcggaccagatc
cgtgggtggtcgtacggcgaggtgaagaagcccgagacgatcaactaccgcacgctcaag
cctgagcgtgatggattgttcggcgagcagatcttcggccccacccgtgactgggagtgc
gcctgcggcaagtacaagcgtgtccgcttcaagggcatcgtgtgcgagcgctgcggcgtc
gaggtcacacggtccaatgtgcgccgtgagcgcatgggccacatcgagctggccgcaccg
gtcacccacatctggtacttcaagggtgtgccgagccggttgggctatctgctcgacatt
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcaccagggtcgac
gaggacgcgcgcagccgcgacctgtcgagcctggaggccaaggtcgccaccgagcacaag
cacatcgagggtcgtcgtgacgccgatgtggaaaagcgcatgagcaagctcgaggaagac
ctcgcgaagcttgaagaagagggcgcgaaggccgatgccaagcgcaaggtgaaggacggc
ggtgagaaggagctcaagaccatccgcgaccgcgcacagcgcgagctggatcgccttgac
gccgtctgggaccgcttcaagggcctcaaggtgcaggacctcgagggcgatgaggtgctc
tatcgcgagatgaagaaccgcttcggcaagtacttcgacggcttcatgggcgccgaggct
gtcaagcgtcgcctggagaccttcgatctggccgccgaggccgattcgctgcgcgagacc
atcctcaccggcaagggccagcgcaagacgcgtgccctgaagcgcctcaaggtggtttcc
gccttcctcgacaccggcaactcgccgatgggcatggtgctggacgctgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgtttcgcgacctccgacctc
aacgacctgtaccgtcgcgtgatcaaccgcaacaatcgcctcaagaggctgcttgacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgattcg
ctgttcgacaacggccgtcgcggccgtccggtgaccggtccgggcaatcgcccgctcaag
tcactgtccgacatgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggtccgcagctgaagatgcaccag
tgtggcctgcccaagcagatggcactggagctgttcaagcccttcgtcatgaagcgcctg
gacgacctcaactacgcgcccaacatcaagagcgccaagcgcatggttgatcgccagcgt
ccgcaggtgttcgacgtgctcgacgaggtcattcgtgagcatccggtgctgctcaaccgc
gcaccgacgctgcaccgtctcggcatccaggccttcgagcccctgctgatcgagggcaag
gccatccagctgcaccccctggtctgcgcggccttcaacgccgactttgatggtgaccag
atggcagtgcacctgccgctgagcgccgaggcacaggccgaggcccgcatcctcatgctg
agctcgaacaacatcctgaagcctgccgatggcaagccgatcgcgttgccgagccacgag
atgatcatcggcatgtactacctcacccaggacctcgacggtctgacgggcgaggggcgt
gccttcagctcgaaggccgaggccgtcatggcctacgacctgcaccagctcgacctgcgt
gccaagtgcaagatccgcctgagcggggtcgtcccgccggttggcctggaggacaagcag
cgtgccgatggttcgctcctgcttgacaccaccctgggccaggtgatcttcaacgaggcg
ctgccggacaactatccctatgtcacctcgcacgtcggcaagaagcagttgtcggccatc
atcaacgacctggccatccggttcccgcgtccggtggttgtcgcaaccctcgacaacctg
aaggacatgggcttccgctggggcacccagtcgggtgtcacggtctcgatcggtgacgtg
cagacgcccccgaacaagcccgagatcatggccagctacgagaagaaggctgccaagatc
gacaagctctacgaccgcggtgctgtcaccgaggaggagcgtcgtggtgagttggtgcag
atctggaatgacgccacggcagagctgaccgacgccatggagaagaacttcacgaagacc
aaccccatctacatgatggtgaactccggtgctcgtggaaacatgacccagatgcgtcag
atcgctgccatgcgtggtctggtggccaacccgaagggcgagatcattgagcgcccgatc
aagtcgaacttccgtgagggcttgacggtgttggagtacttcatctccacccacggtggt
cgaaagggccaggccgataccgcactgcgtaccgcagactccggttacctgacgcgtcga
ctggtcgacgtctcgcaggacgtgatcatccgcgaggaggattgcggcacggagcgtggc
ctgatgaaggccatcgccgagccgggtgccgacggcatgctggttcccgccaagatgctc
gacacttcggtgcacggacgcatcctggccaccgacgccaccgatgagtccggcaaggtc
gtcatcgaggcgggcacgatgctcgactccaccgtggtgggcaatgccatccgcgctggg
atcacgagcatcaaggtgcgttcggtcctcacctgtgaggccaccaccggtgcctgcgcc
aagtgctacggcctgtcgttggccaacggcaagatggtcgaggtcggcgaggcagtcggt
atccaggctgcccagtcgattggcgagcccggcacccagctgacgatgcgtaccttccac
accggcggtgtggctggcgacgacatcacccagggcctgccccgcgtggtcgagctgttt
gaggcacgtaccccgaagggcaaggcgccgatcgccgaggccgatggccgggtgaagatc
gaggagaccgatcgcgggcgcaagctcacgatcgtgcgtgacgacggtggcgaggacgtt
gagtacgcgctgccgcgccgtgcacgcctggagttcgaggattcgaaccgggtgcgccac
tcgatcgccgatggcgttcatgtcggcgtgggcgagcagctcaccggcggcacgatcgac
ccgcaggacgtgctgcgtgtgcgcggcctccgcaaggtgcaggagcacctggtggaggaa
gtgcagaaggtgtacgcctcgcagggttcaccgatccacgacaagcacatcgagatcgtc
attcggcagatgctgcgtcgcgtgaccgtgatcgagtccggcgacaccccgatgatgccc
ggcgaactggttgaccgtaagacctacgaggcagccaaccgcaaggcagtcgaggagggt
ggccgtccggcagagggtcgtccggtgctgatgggcatcacgaaggcctccctggccacc
gaatcgtggctgtcggccgcatcgttccaggagaccaccaaggtgctcaccgatgcgtcg
atccacggcaagtccgaccacctggtcggtctgaaggagaatgtgatcctcggcaagctc
atcccggtgggtaccgggctcgagcgctaccgcgatatcagggtggagccgaccgcagag
gccaaggccaattcgttccaggtgaactacgatccgttcgactacgacttcgggtcgggt
tcgggcgccgcagtgccgttggacgatctggacttcggcgacctgcgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (37)   

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