KEGG   Pestalotiopsis fici: PFICI_09456
Entry
PFICI_09456       CDS       T04924                                 
Name
(RefSeq) hypothetical protein
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
pfy  Pestalotiopsis fici
Pathway
pfy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pfy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PFICI_09456
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfy03400]
    PFICI_09456
Enzymes [BR:pfy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PFICI_09456
DNA repair and recombination proteins [BR:pfy03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     PFICI_09456
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N RNA_ligase mRNA_cap_enzyme Glyco_transf_41 Hamartin
Other DBs
NCBI-GeneID: 19274469
NCBI-ProteinID: XP_007836228
UniProt: W3X0D7
Position
Unknown
AA seq 1013 aa
MPFPFRYICDLLQTLHDETRSKRAQKRPDKALVEDWFHKHRKLLDEPSTNGVAVLSTLLP
GNRPDRVYGIQVNRLQSIISRAMGLGISRLRVLQEYNTLPSSDKDLADCVEELLTNTPNP
KQLEEITVEEIDAALHHVASGCKFSSKEVQASRNKDGQTISLGDFYNRLTARDAKWFTRL
VLKDFAPVVMPETVVIKAYDYRLPEALAVREDFATAISLIREGGLASRPENLIKLGCKVA
RQPWYKAHSIKHCVGMIGTRQVSCEQKIDGEYCQIHIDLSKPRNQELKIYSKSGKESTKD
RKNLHPAIRASLNIGKKACPLKQGCILEGELVVYSDRDRKILPFHKIRKHVSRSGAFLGT
VGDSQRHDHEHLMIIYYDILMLDGTSFLGMQHSDRFQRLTKLITTRKGHAELIQRQIIDF
RRKDAQRLLLAAFAKCIVARGEGLVLKPDDPYFTFGRKKKRYASCAIKLKKAYIKGFGDV
GDFAVIGASHDARTAKSSKIENLKYTHFFLACLDNPTEAQARTHKPKYIVTNIVTLNDTQ
LKYFRQYCNPPMVRPEDHTSSEFDFRGLGNADRPTVIFSDPPVFDIYCFSFDKAPNSAMW
TMRFPQVSKIHLDRDFLDVLSFVQLQEAAHDAVEEPEMEDSQEMRLWLAKLEATDPERKC
LAYDSQSTVSTISTNQTASVVASTDSEAEGEQVQANPVVRPEDTPAAVAPQRGLITPPRS
SATHATAATNVGARGSTAPNTRSSSRKRSSTAVEVTSPSKKPKTNTQNRDIQTTKRKPLG
ARDANDSQRSTRSGRSVSPPLSIGELEATPPVEGHFPSSVTGSFYTANEPPSSPSGRTPR
KGRNAVGNGTMSKDESQVVERCRHVASKKRCAFKGCAFLLSPCIREYAWIDDLLKGHGIF
GFQTIPEVWARQASSRSSSAASTPRSGSPTPGSINSATKRREQRLCLVDSRRADATRDFI
KAIEVAGLTCRNGEREWISVYDWRILEDITSMESRAYRKGGPDPWRARYLGLA
NT seq 3042 nt   +upstreamnt  +downstreamnt
atgccttttccctttcgatatatatgcgacctgctgcagactttgcacgacgaaactcgt
tccaaaagggcacagaaacgtccagacaaagcgcttgtcgaagattggtttcacaaacat
cgcaaactcctagatgagcccagcacaaatggcgttgcggttctctccacgctacttccg
ggcaaccgcccagaccgcgtctatggcatacaagtgaacaggctgcaaagtattatttca
cgagcaatgggcttgggtatctcgcgattgagagtgctacaagaatacaacactctcccc
agcagcgacaaagatctagcagactgtgtcgaagaattactgacaaacacgccgaaccct
aagcaattagaggagattacagtcgaagaaattgatgcagctcttcatcatgttgcctct
ggatgcaaattcagctcaaaggaggttcaggcttctcgtaacaaagatggccagacaata
agccttggcgacttctacaatcgcctcactgcccgcgatgccaagtggttcacccggctg
gtcctcaaggactttgcacccgttgtgatgcccgagactgttgtgatcaaagcatatgat
tacagattacccgaggctctagctgtccgcgaggattttgcaacggctatttccttgata
cgcgaaggcggcttggcctcaagaccagagaacttgatcaaactcggctgcaaggttgcg
cgacaaccctggtacaaggctcacagtatcaagcactgcgtgggcatgataggaacacgc
caagtgagctgcgagcagaagattgatggcgaatattgccagattcatattgatctgagc
aaaccccgaaatcaggaactcaagatctactccaaaagtggaaaggaaagcaccaaagat
cgcaaaaacttgcatcccgccattcgagcatcgttgaatatcgggaagaaagcctgtcca
ctcaagcaagggtgcatcttggaaggtgagctggtggtgtatagtgacagggaccggaag
atactcccttttcacaagattcggaaacacgtatcgagatctggtgcgttcttgggaaca
gttggagattcacagcgccatgatcatgagcatcttatgattatatactacgacatacta
atgctggatggtacatcctttctcggcatgcaacattcagatcgttttcaacggcttacc
aagctgatcacaacccgcaaaggccatgctgagttgattcagcgacagattatcgacttt
cgccggaaagacgcgcaaagactgctcttagcagcctttgcaaagtgcattgtagctcgt
ggagagggtttggtgctgaagccagatgatccttatttcacctttggccgtaaaaagaaa
cgctatgcatcgtgtgccatcaagctcaagaaggcatatatcaaaggtttcggtgacgtc
ggagactttgccgtcatcggtgcctcgcacgatgctagaacggcaaaaagctccaagatc
gagaacctcaagtatacgcacttcttcctggcatgcttggacaatcccactgaagcgcag
gcgagaacccataagcccaagtatattgtcacaaatatcgtaactttgaacgacacacag
ttgaaatattttcgacagtactgcaatcctcccatggtacggccagaggatcacacatcc
tcagagttcgattttcgaggcctcggaaacgctgatcggccgacggttatcttctccgat
ccacccgtcttcgacatctactgtttttcctttgataaagcacccaattcggccatgtgg
acaatgaggttcccccaggtcagtaagattcatctagacagagactttctagatgttctt
tctttcgttcagctgcaggaagctgcccatgatgctgtggaagagcccgaaatggaagac
agtcaggagatgcgattgtggctagccaagcttgaagcaacagaccccgagagaaaatgt
ttggcctatgatagccagtccacagtttcgactatctctacaaatcaaacagcttcagtc
gtggcctccaccgattccgaagccgagggcgaacaggtacaagcaaatcccgtcgtcaga
cctgaagacacgccagcggctgtagcgccgcagcggggcttgatcacgccgcctagatct
tcggctactcatgcaactgctgctactaatgttggagcaagaggtagtacggccccaaac
acaagatcgagcagccgaaaacggtcttcaacggcagtggaagtgacatcgccttcgaag
aaaccaaagacaaacacgcaaaatagagacattcagactaccaaaaggaagccacttggt
gctagagatgccaatgattcccagaggtcaaccaggtctggtcgtagcgtgtcgcctccg
cttagcattggggaactggaggcgacaccaccggtggaagggcactttccatcttcagtg
actggaagcttttataccgcaaacgagcctccgtcgtcaccttccggaagaactccacgc
aaaggcaggaacgctgttggcaacggaacaatgtcgaaagatgaatcgcaagttgtggag
agatgccgccatgtggcaagcaagaaaaggtgtgcctttaaaggctgtgctttcctgcta
tctccttgcatacgcgagtatgcttggattgatgatctcctcaaaggtcacggcatcttt
ggttttcagaccatcccagaggtctgggcaagacaggcgtcatctcgatcctcctcagcg
gcgagcacgccgagatctggtagcccaacacctgggtctatcaacagtgccactaagcga
agagaacaaagactctgcctggttgattcaagaagggctgatgcaactcgagattttatc
aaggcgattgaggtcgccgggttgacatgcagaaatggagagcgggagtggatctcggtc
tatgactggcggattttggaagacattacgagcatggagtcaagagcttacaggaaaggg
ggaccggacccgtggagggctcggtatctgggactggcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (51)   

Download RDF
DBGET integrated database retrieval system