KEGG   Pseudomonas fragi: AV641_06340
Entry
AV641_06340       CDS       T04285                                 
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
pfz  Pseudomonas fragi
Pathway
pfz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pfz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    AV641_06340 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfz03400]
    AV641_06340 (sbcB)
Enzymes [BR:pfz01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     AV641_06340 (sbcB)
DNA repair and recombination proteins [BR:pfz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     AV641_06340 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AV641_06340 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      AV641_06340 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T
Other DBs
NCBI-ProteinID: AMB78712
Position
1353610..1355055
AA seq 481 aa
MTSIFWYDYETTGINPRCDRAVQVAGIRTDVDLNEIDQPLNLYCQPSDDILPHPMACLIT
GITPGRLEDKGLGEAEFMTRTHAQLALPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRTAYALRPEGIVWPEDEGRVTLKLERLTAANGIDHGQAHDALSDVR
ATIALARLIRDKQPKLYEWLFKLRTKQRVLDQVRLLQPMLHISGRFSAARHYAGVVLPLA
WHPKNRNALIVYDLHFDPQPLLDMDAESLRQMLYTRREDLAEGQQPVALKLIHVNRCPVV
APLNVVRAQDQQRLQLDMALYQARAATLIEAQQVWQDKLSAIYASEDFVPAADPEQQLYD
GFLGERDRRLCEQVRLSDPEQLAGTTWPFDDERLPELLFRYRARNFPHTLSAEELERWQL
FCRQRLTDPAMGAPLTLDDFTRAALELSRSAKPAQLKLLSEWQRYAQGLGRRLGMNSQAQ
D
NT seq 1446 nt   +upstreamnt  +downstreamnt
gtgacctctattttttggtacgactatgaaaccaccggcatcaacccgcgctgcgatcgg
gctgtgcaggttgccggtatccgcaccgatgtcgacctcaatgagattgatcagccgctc
aatctgtattgccagcccagtgacgatattcttcctcaccccatggcttgcctgatcacc
ggtattacccccgggcgcctggaagacaagggcctgggggaggccgagttcatgacccgc
acccacgcgcaactggcattgcccggcacctgtggcgcaggctacaactccttgcgtttc
gatgacgaagtcacgcgctacagcctgtaccggaatttcttcgatccttatgcccgcgag
tggcagggcggcaacagtcgctgggatttgattgatgtagtgcgaaccgcgtatgccctg
cgtccggaaggaattgtctggcctgaagacgaggggcgagtgaccctcaagctcgagcgt
ttgacggctgccaacgggattgatcatggccaggcccatgatgccttgtccgatgtgagg
gccaccatcgcgttggcgcggctgattcgtgacaagcaacccaagttgtatgagtggtta
ttcaagctgcgcacgaaacagcgggtgcttgatcaagttcggttattgcaacccatgctg
catatttcagggcgcttctctgcggccaggcattatgcgggggtggtattgccgctggcc
tggcatccaaaaaaccgcaatgcactgattgtgtacgatctgcattttgatcctcagcca
ttactggacatggatgcagagtccttgcgccagatgctctatacccggcgcgaagacttg
gctgaaggccagcagccggttgcgctgaagctgatacatgttaaccgttgtccggtggtg
gcccccttgaatgtagtgcgggcccaggatcaacagcgtttgcaactggacatggcgctt
tatcaagcgcgtgcggcgacgcttattgaggctcagcaagtttggcaggacaagttatcg
gctatttatgccagcgaagatttcgtccccgctgccgatcccgagcaacagttgtatgac
ggttttctcggtgagcgtgatcgtcgattgtgtgagcaagtcaggctcagtgatccggag
caattagcaggtactacttggccttttgatgacgagcgtttacctgaattattgtttcgc
taccgtgcgcgaaacttcccccataccttgagcgcggaagaacttgagcgttggcaattg
ttctgtcggcagcgcttgaccgacccggccatgggcgcgcccctgaccctggatgatttc
acccgcgcagcgctggagctgtcacgcagtgccaagcccgcccaactgaagctgttgagt
gaatggcagcgctatgcgcaaggtcttggccgccgtctggggatgaactcgcaggcgcag
gactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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